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set-28 SET domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 190641, updated on 2-Nov-2024

Summary

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Official Symbol
set-28
Official Full Name
SET domain-containing protein
Primary source
WormBase:WBGene00022224
Locus tag
CELE_Y73B3B.2
See related
AllianceGenome:WB:WBGene00022224
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in germ line. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See set-28 in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Sequence:
Chromosome: X; NC_003284.9 (214580..215588, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Calponin-homology (CH) domain-containing protein Neighboring gene Signal transduction histidine kinase Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nibbling 405 kb off the X: Viable deletion alleles eliminating 50 protein coding genes, including a chromatin factor involved in neuronal development. Minevich G, et al. MicroPubl Biol, 2019 Oct 25. PMID 32550431, Free PMC Article
  2. Two C. elegans histone methyltransferases repress lin-3 EGF transcription to inhibit vulval development. Andersen EC, et al. Development, 2007 Aug. PMID 17634190
  3. Epigenetics in C. elegans: facts and challenges. Wenzel D, et al. Genesis, 2011 Aug. PMID 21538806
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
SET domain-containing protein
NP_508049.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    214580..215588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075648.2 → NP_508049.1  SET domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508049.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95XE0
    Conserved Domains (1) summary
    cl40432
    Location:52 → 153
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
Nucleotide Protein
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