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clec-143 VWFA domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 191390, updated on 28-Oct-2024

Summary

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Official Symbol
clec-143
Official Full Name
VWFA domain-containing protein
Primary source
WormBase:WBGene00014063
Locus tag
CELE_ZK673.9
See related
AllianceGenome:WB:WBGene00014063
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See clec-143 in Genome Data Viewer
Location:
chromosome: II
Exon count:
9
Sequence:
Chromosome: II; NC_003280.10 (10468202..10470297, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene SKN-1 Dependent Zygotic transcript Neighboring gene Troponin C Neighboring gene Pepsin-I3 domain-containing protein Neighboring gene Spore coat protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans. Schulenburg H, et al. Immunobiology, 2008. PMID 18406370
  2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
VWFA domain-containing protein
NP_496252.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    10468202..10470297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063851.3 → NP_496252.1  VWFA domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496252.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EE24
    Conserved Domains (2) summary
    smart00034
    Location:238 → 385
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cd01477
    Location:23 → 216
    vWA_F09G8-8_type; VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b ...
Nucleotide Protein
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