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sto-3 Stomatin-3 [ Caenorhabditis elegans ]

Gene ID: 191966, updated on 9-Dec-2024

Summary

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Official Symbol
sto-3
Official Full Name
Stomatin-3
Primary source
WormBase:WBGene00006065
Locus tag
CELE_F52D10.5
See related
AllianceGenome:WB:WBGene00006065
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in RIB; ray neuron type B; and tail. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See sto-3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Sequence:
Chromosome: X; NC_003284.9 (11619953..11622097, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA Neighboring gene Potassium channel domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. sto-3 is expressed in R4BL/R and R8BL/R, male-specific ray neurons in C. elegans. Susoy V, et al. MicroPubl Biol, 2019 Mar 6. PMID 32550466, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Stomatin-3
NP_509941.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    11619953..11622097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077540.2 → NP_509941.1  Stomatin-3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509941.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q20657
    Conserved Domains (2) summary
    smart00244
    Location:37 → 196
    PHB; prohibitin homologues
    cl19107
    Location:62 → 261
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q20657.1

Gene LinkOut

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