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lncRNA:CR45542 long non-coding RNA:CR45542 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 19835448, updated on 9-Dec-2024

Summary

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Official Symbol
lncRNA:CR45542provided by FlyBase
Official Full Name
long non-coding RNA:CR45542provided by FlyBase
Primary source
FLYBASE:FBgn0267102
Locus tag
Dmel_CR45542
See related
AllianceGenome:FB:FBgn0267102
Gene type
ncRNA
RNA name
lncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR45542; Dmel\CR45542
Summary
Involved in spermatogenesis. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See lncRNA:CR45542 in Genome Data Viewer
Location:
8E10-8E10; 1-28 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (9590093..9590619, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (9484126..9484652, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45541 Neighboring gene Hexokinase A Neighboring gene long non-coding RNA:CR45543 Neighboring gene Golgi-localized, gamma-adaptin ear containing, ARF binding protein Neighboring gene Lst8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Critical roles of long noncoding RNAs in Drosophila spermatogenesis. Wen K, et al. Genome Res, 2016 Sep. PMID 27516619, Free PMC Article
  2. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR45542-RA; Dmel\lncRNA:CR45542-RA; CR45542-RA; Dmel\CR45542-RA

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in spermatogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    9590093..9590619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_123846.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.