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Snord3b4 small nucleolar RNA, C/D box 3B4 [ Mus musculus (house mouse) ]

Gene ID: 19861, updated on 17-Aug-2024

Summary

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Official Symbol
Snord3b4provided by MGI
Official Full Name
small nucleolar RNA, C/D box 3B4provided by MGI
Primary source
MGI:MGI:97988
See related
Ensembl:ENSMUSG00002074955 AllianceGenome:MGI:97988
Gene type
snRNA
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnu3b4; Rnu3b-4; 1810064A23Rik
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Genomic context

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See Snord3b4 in Genome Data Viewer
Location:
11 C; 11 52.11 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (87353112..87353329)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (87462286..87462503)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene testis expressed gene 14 intercellular bridge forming factor Neighboring gene STARR-positive B cell enhancer mm9_chr11:87261696-87261996 Neighboring gene STARR-positive B cell enhancer mm9_chr11:87262254-87262555 Neighboring gene predicted gene, 23137 Neighboring gene small nucleolar RNA, C/D box 3B3 Neighboring gene STARR-positive B cell enhancer ABC_E3992 Neighboring gene STARR-seq mESC enhancer starr_30291 Neighboring gene small nucleolar RNA, C/D box 3B2 Neighboring gene STARR-seq mESC enhancer starr_30292 Neighboring gene predicted gene, 34000

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Organization of the gene family encoding mouse U3B RNA: role of gene conversions in its concerted evolution. Mazan S, et al. Gene, 1990 Oct 15. PMID 2258057
  2. Composition and chromosomal localization of the small multigene family encoding mouse U3B nucleolar RNA. Mazan S, et al. Cytogenet Cell Genet, 1991. PMID 2004550
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • U3B small nuclear RNA 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002843.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AK019039
    Related
    ENSMUST00020183227.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    87353112..87353329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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