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BC048679 cDNA sequence BC048679 [ Mus musculus (house mouse) ]

Gene ID: 210321, updated on 27-Nov-2024

Summary

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Official Symbol
BC048679provided by MGI
Official Full Name
cDNA sequence BC048679provided by MGI
Primary source
MGI:MGI:3510776
See related
Ensembl:ENSMUSG00000061877 AllianceGenome:MGI:3510776
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward genital fat pad adult (RPKM 333.6) See more
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Genomic context

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See BC048679 in Genome Data Viewer
Location:
7 D3; 7 45.71 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (81144022..81148078, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (81494274..81498330, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene cytoplasmic polyadenylation element binding protein 1 Neighboring gene ribosomal protein L7A, pseudogene 9 Neighboring gene adaptor-related protein complex 3, beta 2 subunit Neighboring gene STARR-seq mESC enhancer starr_19364 Neighboring gene predicted gene, 45991 Neighboring gene RIKEN cDNA 2900076A07 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:88668387-88668540 Neighboring gene microRNA 1839

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Discovery in silico and characterization in vitro of novel genes exclusively expressed in the mouse epididymis. Penttinen J, et al. Mol Endocrinol, 2003 Nov. PMID 12920233
  2. Gene expression in the developing mouse retina by EST sequencing and microarray analysis. Mu X, et al. Nucleic Acids Res, 2001 Dec 15. PMID 11812828, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC210321
Names
epididymal protein Av381126

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193274.1 → NP_001180203.1  uncharacterized protein LOC210321 isoform 1

    See identical proteins and their annotated locations for NP_001180203.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BB073717, BC048679, BG803866
    Consensus CDS
    CCDS57558.1
    UniProtKB/TrEMBL
    D3YXE9
    Related
    ENSMUSP00000120616.2, ENSMUST00000144156.2
    Conserved Domains (2) summary
    COG0791
    Location:43 → 77
    Spr; Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]
    cl21534
    Location:43 → 90
    NLPC_P60; NlpC/P60 family

  2. NM_001358040.1 → NP_001344969.1  uncharacterized protein LOC210321 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal in-frame exon, compared to variant 1. The resulting isoform (3) lacks an internal segment, compared to isoform 1.
    Source sequence(s)
    BB073717, BC145514, BG803866
    Consensus CDS
    CCDS90262.1
    UniProtKB/TrEMBL
    A0A140LJ97
    Related
    ENSMUSP00000147131.2, ENSMUST00000207871.2
    Conserved Domains (1) summary
    cl21534
    Location:37 → 84
    NLPC_P60; NlpC/P60 family

  3. NM_183143.3 → NP_898966.1  uncharacterized protein LOC210321 isoform 2

    See identical proteins and their annotated locations for NP_898966.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
    Source sequence(s)
    AC167121
    Consensus CDS
    CCDS40008.1
    UniProtKB/TrEMBL
    Q6XL63
    Related
    ENSMUSP00000073114.6, ENSMUST00000073406.12
    Conserved Domains (2) summary
    COG0791
    Location:43 → 77
    Spr; Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]
    cl21534
    Location:43 → 77
    NLPC_P60; NlpC/P60 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    81144022..81148078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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