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4933430I17Rik RIKEN cDNA 4933430I17 gene [ Mus musculus (house mouse) ]

Gene ID: 214106, updated on 27-Nov-2024

Summary

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Official Symbol
4933430I17Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933430I17 geneprovided by MGI
Primary source
MGI:MGI:3045314
See related
Ensembl:ENSMUSG00000058046 AllianceGenome:MGI:3045314
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
bN189G18.7
Summary
Orthologous to human C9orf43 (chromosome 9 open reading frame 43). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 1.5), CNS E11.5 (RPKM 0.5) and 13 other tissues See more
Orthologs
human all
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Genomic context

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See 4933430I17Rik in Genome Data Viewer
Location:
4 B3; 4 33.17 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (62443541..62471270)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (62525304..62553033)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62186055-62186242 Neighboring gene aminolevulinate, delta-, dehydratase Neighboring gene polymerase (DNA directed), epsilon 3 (p17 subunit) Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62213110-62213293 Neighboring gene STARR-positive B cell enhancer mm9_chr4:62222257-62222558 Neighboring gene regulator of G-protein signaling 3 Neighboring gene STARR-positive B cell enhancer mm9_chr4:62322547-62322847 Neighboring gene STARR-seq mESC enhancer starr_10430 Neighboring gene predicted gene, 52741 Neighboring gene STARR-seq mESC enhancer starr_10432 Neighboring gene predicted gene 11210 Neighboring gene predicted gene 11211

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C9orf43 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356420.2 → NP_001343349.2  uncharacterized protein C9orf43 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL732594
    Conserved Domains (1) summary
    pfam15504
    Location:1 → 450
    DUF4647; Domain of unknown function (DUF4647)

  2. NM_001356421.2 → NP_001343350.2  uncharacterized protein C9orf43 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL732594
    Conserved Domains (1) summary
    pfam15504
    Location:1 → 450
    DUF4647; Domain of unknown function (DUF4647)

  3. NM_001356422.2 → NP_001343351.2  uncharacterized protein C9orf43 homolog isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL732594
    Conserved Domains (1) summary
    pfam15504
    Location:1 → 415
    DUF4647; Domain of unknown function (DUF4647)

  4. NM_001377106.1 → NP_001364035.1  uncharacterized protein C9orf43 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL732594
    Conserved Domains (1) summary
    pfam15504
    Location:1 → 322
    DUF4647; Domain of unknown function (DUF4647)

  5. NM_177607.4 → NP_808275.2  uncharacterized protein C9orf43 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL732594
    Consensus CDS
    CCDS18245.1
    UniProtKB/TrEMBL
    F6UZS4
    Related
    ENSMUSP00000050465.3, ENSMUST00000062145.2
    Conserved Domains (1) summary
    pfam15504
    Location:1 → 460
    DUF4647; Domain of unknown function (DUF4647)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    62443541..62471270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249971.3 → XP_011248273.1  uncharacterized protein C9orf43 homolog isoform X2

    Conserved Domains (1) summary
    pfam15504
    Location:22 → 481
    DUF4647; Domain of unknown function (DUF4647)

  2. XM_030253385.2 → XP_030109245.1  uncharacterized protein C9orf43 homolog isoform X6

    Conserved Domains (1) summary
    pfam15504
    Location:22 → 388
    DUF4647; Domain of unknown function (DUF4647)

  3. XM_036163948.1 → XP_036019841.1  uncharacterized protein C9orf43 homolog isoform X7

    Conserved Domains (1) summary
    pfam15504
    Location:22 → 343
    DUF4647; Domain of unknown function (DUF4647)

  4. XM_030253384.2 → XP_030109244.1  uncharacterized protein C9orf43 homolog isoform X5

    Conserved Domains (1) summary
    pfam15504
    Location:22 → 436
    DUF4647; Domain of unknown function (DUF4647)

  5. XM_006537739.5 → XP_006537802.1  uncharacterized protein C9orf43 homolog isoform X4

    See identical proteins and their annotated locations for XP_006537802.1

    UniProtKB/TrEMBL
    F6UZS4
    Conserved Domains (1) summary
    pfam15504
    Location:1 → 460
    DUF4647; Domain of unknown function (DUF4647)

  6. XM_006537736.5 → XP_006537799.1  uncharacterized protein C9orf43 homolog isoform X1

    See identical proteins and their annotated locations for XP_006537799.1

    UniProtKB/TrEMBL
    Q8BHW4
    Conserved Domains (1) summary
    pfam15504
    Location:22 → 481
    DUF4647; Domain of unknown function (DUF4647)

  7. XM_036163947.1 → XP_036019840.1  uncharacterized protein C9orf43 homolog isoform X3

    UniProtKB/TrEMBL
    Q14AX1
    Conserved Domains (1) summary
    pfam15504
    Location:22 → 471
    DUF4647; Domain of unknown function (DUF4647)

  8. XM_030253387.2 → XP_030109247.1  uncharacterized protein C9orf43 homolog isoform X8

    Conserved Domains (1) summary
    pfam15504
    Location:1 → 323
    DUF4647; Domain of unknown function (DUF4647)

  9. XM_006537740.5 → XP_006537803.1  uncharacterized protein C9orf43 homolog isoform X4

    See identical proteins and their annotated locations for XP_006537803.1

    UniProtKB/TrEMBL
    F6UZS4
    Conserved Domains (1) summary
    pfam15504
    Location:1 → 460
    DUF4647; Domain of unknown function (DUF4647)

RNA

  1. XR_003954905.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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