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Uqcc4 ubiquinol-cytochrome c reductase complex assembly factor 4 [ Mus musculus (house mouse) ]

Gene ID: 214489, updated on 27-Nov-2024

Summary

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Official Symbol
Uqcc4provided by MGI
Official Full Name
ubiquinol-cytochrome c reductase complex assembly factor 4provided by MGI
Primary source
MGI:MGI:2670966
See related
Ensembl:ENSMUSG00000067722 AllianceGenome:MGI:2670966
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ccsmst1
Summary
Involved in mitochondrial respiratory chain complex III assembly. Located in mitochondrial inner membrane. Orthologous to human UQCC4 (ubiquinol-cytochrome c reductase complex assembly factor 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 12.3), adrenal adult (RPKM 10.5) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Uqcc4 in Genome Data Viewer
Location:
17 A3.3; 17 12.53 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (25403535..25406636)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (25184561..25187662)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene chloride channel, voltage-sensitive 7 Neighboring gene microRNA 12188 Neighboring gene coiled-coil domain containing 154 Neighboring gene intestine-critical region regulatory element Neighboring gene proline and glutamate rich with coiled coil 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:25321285-25321526 Neighboring gene predicted gene, 52286 Neighboring gene unkempt family like zinc finger Neighboring gene N-acetylglucosamine-1-phosphotransferase, gamma subunit Neighboring gene TSR3 20S rRNA accumulation

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mitochondrial microproteins link metabolic cues to respiratory chain biogenesis. Liang C, et al. Cell Rep, 2022 Aug 16. PMID 35977508
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC7403

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in mitochondrial respiratory chain complex III assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitochondrial respiratory chain complex III assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrial inner membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ubiquinol-cytochrome c reductase complex assembly factor 4
Names
protein CCSMST1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183150.2 → NP_898973.2  ubiquinol-cytochrome c reductase complex assembly factor 4 precursor

    See identical proteins and their annotated locations for NP_898973.2

    Status: VALIDATED

    Source sequence(s)
    AC130711, BC094389, BY262222
    Consensus CDS
    CCDS57057.1
    UniProtKB/Swiss-Prot
    Q6RUT7
    Related
    ENSMUSP00000137122.2, ENSMUST00000088307.5
    Conserved Domains (2) summary
    pfam04697
    Location:7 → 61
    Pinin_SDK_N; pinin/SDK conserved region
    pfam15013
    Location:49 → 111
    CCSMST1; CCSMST1 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    25403535..25406636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6RUT7.1 GenPept UniProtKB/Swiss-Prot:Q6RUT7

Gene LinkOut

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