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LPMP_357110 chaperonin, putative [ Leishmania panamensis ]

Gene ID: 22579739, updated on 30-Oct-2024

Summary

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Gene symbol
LPMP_357110
Gene description
chaperonin, putative
Locus tag
LPMP_357110
See related
TriTrypDB:LPMP_357110; VEuPathDB:LPMP_357110
Gene type
protein coding
RNA name
chaperonin, putative
RefSeq status
PROVISIONAL
Organism
Leishmania panamensis (strain: MHOM/PA/94/PSC-1)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania guyanensis species complex
Orthologs
Leishmania major all
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Genomic context

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Location:
chromosome: 35
Exon count:
1
Sequence:
Chromosome: 35; NC_025882.1 (2585007..2586620, complement)

Chromosome 35 - NC_025882.1Genomic Context describing neighboring genes Neighboring gene nucleoporin, putative Neighboring gene hypothetical protein Neighboring gene ribosomal protein L1-like protein Neighboring gene RNA editing comple protein MP63

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025882.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of Leishmania panamensis: insights into genomics of the L. (Viannia) subgenus. Llanes A, et al. Sci Rep, 2015 Feb 24. PMID 25707621, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chaperonin-containing T-complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
chaperonin, putative
XP_010703638.1
  • TriTrypDB/GeneDB-style sysID: LpmP.35.7110

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_025882.1 Reference assembly

    Range
    2585007..2586620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010705336.1 → XP_010703638.1  chaperonin, putative [Leishmania panamensis]

    See identical proteins and their annotated locations for XP_010703638.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A088S362
    Conserved Domains (2) summary
    cd03341
    Location:19 → 521
    TCP1_theta; TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
    pfam00118
    Location:33 → 521
    Cpn60_TCP1; TCP-1/cpn60 chaperonin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases