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Aadacl2fm1 AADACL2 family member 1 [ Mus musculus (house mouse) ]

Gene ID: 229333, updated on 27-Nov-2024

Summary

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Official Symbol
Aadacl2fm1provided by MGI
Official Full Name
AADACL2 family member 1provided by MGI
Primary source
MGI:MGI:3028051
See related
Ensembl:ENSMUSG00000036951 AllianceGenome:MGI:3028051
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C130079G13Rik
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Aadacl2fm1 in Genome Data Viewer
Location:
3 D; 3 29.11 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (59832635..59845370)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (59925214..59937949)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 16527 Neighboring gene predicted gene 2756 Neighboring gene AADACL2 family member 3 Neighboring gene STARR-seq mESC enhancer starr_07771 Neighboring gene arylacetamide deacetylase-like 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_07773 Neighboring gene arylacetamide deacetylase like 2 Neighboring gene crumbs homolog 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC229333

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177661.3 → NP_808329.1  uncharacterized protein LOC229333

    See identical proteins and their annotated locations for NP_808329.1

    Status: PREDICTED

    Source sequence(s)
    AK081819
    Consensus CDS
    CCDS38441.1
    UniProtKB/TrEMBL
    Q8BUY2
    Related
    ENSMUSP00000047032.3, ENSMUST00000049476.3
    Conserved Domains (2) summary
    COG0657
    Location:4 → 267
    Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
    pfam07859
    Location:4 → 251
    Abhydrolase_3; alpha/beta hydrolase fold

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    59832635..59845370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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