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9430015G10Rik RIKEN cDNA 9430015G10 gene [ Mus musculus (house mouse) ]

Gene ID: 230996, updated on 27-Nov-2024

Summary

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Official Symbol
9430015G10Rikprovided by MGI
Official Full Name
RIKEN cDNA 9430015G10 geneprovided by MGI
Primary source
MGI:MGI:2444364
See related
Ensembl:ENSMUSG00000059939 AllianceGenome:MGI:2444364
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including blastocyst; early embryo; and extraembryonic component. Orthologous to human C1orf159 (chromosome 1 open reading frame 159). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in testis adult (RPKM 29.5), limb E14.5 (RPKM 19.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 9430015G10Rik in Genome Data Viewer
Location:
4 E2; 4 88.33 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (156194455..156211720)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (156109998..156127265)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13648 Neighboring gene STARR-seq mESC enhancer starr_12282 Neighboring gene microRNA 200b Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:155444299-155444408 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:155444441-155444699 Neighboring gene predicted gene, 52714 Neighboring gene STARR-positive B cell enhancer ABC_E1672 Neighboring gene ring finger 223 Neighboring gene STARR-seq mESC enhancer starr_12288 Neighboring gene STARR-seq mESC enhancer starr_12289 Neighboring gene agrin Neighboring gene STARR-seq mESC enhancer starr_12290 Neighboring gene STARR-seq mESC enhancer starr_12291 Neighboring gene predicted gene, 46878

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Venus trap in the mouse embryo reveals distinct molecular dynamics underlying specification of first embryonic lineages. Dietrich JE, et al. EMBO Rep, 2015 Aug. PMID 26142281, Free PMC Article
  2. A molecular profile of a hematopoietic stem cell niche. Hackney JA, et al. Proc Natl Acad Sci U S A, 2002 Oct 1. PMID 12226475, Free PMC Article
  3. A mouse knockout library for secreted and transmembrane proteins. Tang T, et al. Nat Biotechnol, 2010 Jul. PMID 20562862
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C1orf159 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145557.3 → NP_663532.2  uncharacterized protein C1orf159 homolog precursor

    See identical proteins and their annotated locations for NP_663532.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant (1). Both variants encode the same protein.
    Source sequence(s)
    AL928667, BQ830972, CA945382, CO803636
    Consensus CDS
    CCDS19059.1
    UniProtKB/TrEMBL
    A2ASP7, Q99KU2
    Related
    ENSMUSP00000072366.7, ENSMUST00000072554.13
    Conserved Domains (1) summary
    pfam14946
    Location:23 → 199
    DUF4501; Domain of unknown function (DUF4501)

  2. NM_177205.1 → NP_796179.1  uncharacterized protein C1orf159 homolog precursor

    See identical proteins and their annotated locations for NP_796179.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants encode the same protein.
    Source sequence(s)
    AL928667, BY727027, CA945382, CO803636
    Consensus CDS
    CCDS19059.1
    UniProtKB/TrEMBL
    A2ASP7, Q99KU2
    Related
    ENSMUSP00000131817.2, ENSMUST00000169550.8
    Conserved Domains (1) summary
    pfam14946
    Location:23 → 199
    DUF4501; Domain of unknown function (DUF4501)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    156194455..156211720
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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