Ttc38 tetratricopeptide repeat domain 38 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Ttc38provided by MGI
Official Full Name: tetratricopeptide repeat domain 38provided by MGI
Primary source: MGI:MGI:2146198
See related: Ensembl:ENSMUSG00000035944 AllianceGenome:MGI:2146198
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 9030019H09
Summary: Orthologous to human TTC38 (tetratricopeptide repeat domain 38). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Ubiquitous expression in liver adult (RPKM 10.1), bladder adult (RPKM 8.2) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 15 E2; 15 40.42 cM

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	15	NC_000081.7 (85716545..85743023)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	15	NC_000081.6 (85832282..85858822)

Chromosome 15 - NC_000081.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

General gene information

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Markers

NoName (e-PCR)
- UniSTS:488489

AW124722 (e-PCR)
- UniSTS:180810

NoName (e-PCR)
- UniSTS:495783

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

General protein information

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Preferred Names: tetratricopeptide repeat protein 38

Names: TPR repeat protein 38

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001033337.5 → NP_001028509.2 tetratricopeptide repeat protein 38 isoform 1

See identical proteins and their annotated locations for NP_001028509.2

Status: VALIDATED

Source sequence(s)

AC117784, AC139513

Consensus CDS

CCDS27724.2

UniProtKB/Swiss-Prot

A3KMP2, Q05C02, Q05CK3, Q3UZU5

Related

ENSMUSP00000114504.2, ENSMUST00000146088.8

Conserved Domains (1) summary

cd05804
Location:56 → 419

StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
NM_001416054.1 → NP_001402983.1 tetratricopeptide repeat protein 38 isoform 2

Status: VALIDATED

Source sequence(s)

AC117784, AC139513
NM_001416055.1 → NP_001402984.1 tetratricopeptide repeat protein 38 isoform 3

Status: VALIDATED

Source sequence(s)

AC117784, AC139513
NM_001416056.1 → NP_001402985.1 tetratricopeptide repeat protein 38 isoform 3

Status: VALIDATED

Source sequence(s)

AC117784, AC139513

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000081.7 Reference GRCm39 C57BL/6J

Range

85716545..85743023

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006520954.5 → XP_006521017.1 tetratricopeptide repeat protein 38 isoform X3

Conserved Domains (1) summary

cd05804
Location:1 → 198

StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated ...