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Cntn5 contactin 5 [ Mus musculus (house mouse) ]

Gene ID: 244682, updated on 4-Jan-2025

Summary

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Official Symbol
Cntn5provided by MGI
Official Full Name
contactin 5provided by MGI
Primary source
MGI:MGI:3042287
See related
Ensembl:ENSMUSG00000039488 AllianceGenome:MGI:3042287
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NB-2; Gm507; 6720426O10Rik; A830025P08Rik
Summary
Predicted to enable cell-cell adhesion mediator activity. Involved in presynapse assembly. Acts upstream of or within sensory perception of sound. Is active in GABA-ergic synapse and presynaptic membrane. Is expressed in central nervous system. Orthologous to human CNTN5 (contactin 5). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in CNS E18 (RPKM 1.7), whole brain E14.5 (RPKM 0.8) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See Cntn5 in Genome Data Viewer
Location:
9 A1; 9 2.46 cM
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (9627928..10904992, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (9634223..10904775, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_23268 Neighboring gene STARR-seq mESC enhancer starr_23269 Neighboring gene protein cornichon homolog 4 pseudogene Neighboring gene STARR-seq mESC enhancer starr_23270 Neighboring gene predicted gene, 46102 Neighboring gene STARR-seq mESC enhancer starr_23272 Neighboring gene STARR-seq mESC enhancer starr_23273 Neighboring gene microRNA 6237 Neighboring gene STARR-seq mESC enhancer starr_23275 Neighboring gene STARR-seq mESC enhancer starr_23276 Neighboring gene STARR-seq mESC enhancer starr_23277 Neighboring gene predicted gene, 39289 Neighboring gene STARR-seq mESC enhancer starr_23278 Neighboring gene STARR-seq mESC enhancer starr_23281 Neighboring gene STARR-seq mESC enhancer starr_23283 Neighboring gene STARR-seq mESC enhancer starr_23284 Neighboring gene predicted gene, 57548 Neighboring gene STARR-seq mESC enhancer starr_23285 Neighboring gene STARR-seq mESC enhancer starr_23286 Neighboring gene CD2-associated protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_23287 Neighboring gene predicted gene, 32710 Neighboring gene STARR-seq mESC enhancer starr_23288 Neighboring gene STARR-seq mESC enhancer starr_23289 Neighboring gene STARR-seq mESC enhancer starr_23290 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_23291 Neighboring gene STARR-seq mESC enhancer starr_23292 Neighboring gene RAB11 family interacting protein 5 (class I) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Unexpected phenotypic effects of a transgene integration causing a knockout of the endogenous Contactin-5 gene in mice. Smirnov AV, et al. Transgenic Res, 2018 Feb. PMID 29264679
  2. Deficiency of neural recognition molecule NB-2 affects the development of glutamatergic auditory pathways from the ventral cochlear nucleus to the superior olivary complex in mouse. Toyoshima M, et al. Dev Biol, 2009 Dec 15. PMID 19818338
  3. Aberrant responses to acoustic stimuli in mice deficient for neural recognition molecule NB-2. Li H, et al. Eur J Neurosci, 2003 Mar. PMID 12653969
  4. A cis-complex of NB-2/contactin-5 with amyloid precursor-like protein 1 is localized on the presynaptic membrane. Shimoda Y, et al. Neurosci Lett, 2012 Feb 29. PMID 22285261
  5. Structural abnormalities in the primary somatosensory cortex and a normal behavioral profile in Contactin-5 deficient mice. Kleijer KTE, et al. Cell Adh Migr, 2018 Jan 2. PMID 28346043, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. demonstrate a selective role of Cntn5 in development of the cerebral cortex without overt behavioral phenotypes
    Title: Structural abnormalities in the primary somatosensory cortex and a normal behavioral profile in Contactin-5 deficient mice.
  2. These findings link Cntn5 deficiency to obesity and hypertension
    Title: Unexpected phenotypic effects of a transgene integration causing a knockout of the endogenous Contactin-5 gene in mice.
  3. Protein-tyrosine phosphatase receptor type G (RPTPgamma/PTPRG) interacts in vitro with contactin-3-6 (CNTN3-6), a group of glycophosphatidylinositol-anchored cell adhesion molecules involved in the wiring of the nervous system
    Title: Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues.
  4. The results of this study indicated that the Cntn5 are exploited for circuit formation and connectivity in early development and for synaptic maintenance during adulthood. Subtle alterations in the formation of the thalamocortical circuit
    Title: Contactin-5 expression during development and wiring of the thalamocortical system.
  5. findings demonstrated that NB-2 interacts with APLP and that both NB-2 and APLP1 are localized at presynaptic sites, suggesting that NB-2 associates with APLP1 in a cis manner on the presynaptic membrane
    Title: A cis-complex of NB-2/contactin-5 with amyloid precursor-like protein 1 is localized on the presynaptic membrane.
  6. NB-2 deficiency causes a deficit in synapse formation and then induces apoptosis in MNTB and VCN neurons, affecting auditory brainstem function
    Title: Deficiency of neural recognition molecule NB-2 affects the development of glutamatergic auditory pathways from the ventral cochlear nucleus to the superior olivary complex in mouse.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Gene trapped (1) 
  • Targeted (1)  1 citation

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in axon guidance IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
  
involved_in dendrite self-avoidance IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in presynapse assembly IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in presynapse assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within sensory perception of sound IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in synapse organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in GABA-ergic synapse IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in GABA-ergic synapse IMP
Inferred from Mutant Phenotype
more info
 PubMed 
is_active_in axon IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in presynaptic membrane IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in presynaptic membrane IEP
Inferred from Expression Pattern
more info
 PubMed 
located_in side of membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in synapse IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
contactin-5
Names
neural recognition molecule NB-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033359.2 → NP_001028531.2  contactin-5 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks three alternate in-frame exons in the 5' coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
    Source sequence(s)
    AC118029, AK162856, CT033779
    Consensus CDS
    CCDS52721.1
    UniProtKB/TrEMBL
    E9PYK7, Q3TRE5
    Related
    ENSMUSP00000124214.2, ENSMUST00000162484.8
    Conserved Domains (5) summary
    cd04969
    Location:290 → 362
    Ig5_Contactin_like; Fifth Ig domain of contactin
    smart00410
    Location:18 → 72
    IG_like; Immunoglobulin like
    cd00063
    Location:465 → 562
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:274 → 362
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:94 → 181
    Ig; Immunoglobulin domain

  2. NM_001170787.1 → NP_001164258.1  contactin-5 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001164258.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC102350, AC107635, AC113470, AC118029, AC153417, AC154645, AC154651, CT033779
    Consensus CDS
    CCDS52722.1
    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Related
    ENSMUSP00000124327.2, ENSMUST00000160216.8
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    9627928..10904992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036154952.1 → XP_036010845.1  contactin-5 isoform X6

    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  2. XM_036154939.1 → XP_036010832.1  contactin-5 isoform X2

    Conserved Domains (6) summary
    cd00063
    Location:1006 → 1103
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00552
    Location:243 → 288
    IN_DBD_C; Integrase DNA binding domain
    pfam00665
    Location:78 → 172
    rve; Integrase core domain
    pfam02022
    Location:26 → 62
    Integrase_Zn; Integrase Zinc binding domain
    cd00096
    Location:406 → 410
    Ig; Ig strand A [structural motif]
    cl11960
    Location:404 → 499
    Ig; Immunoglobulin domain

  3. XM_036154954.1 → XP_036010847.1  contactin-5 isoform X8

    Conserved Domains (4) summary
    cd00063
    Location:602 → 699
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:411 → 499
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  4. XM_006509867.5 → XP_006509930.1  contactin-5 isoform X4

    See identical proteins and their annotated locations for XP_006509930.1

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  5. XM_036154953.1 → XP_036010846.1  contactin-5 isoform X8

    Conserved Domains (4) summary
    cd00063
    Location:602 → 699
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:411 → 499
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  6. XM_006509873.5 → XP_006509936.1  contactin-5 isoform X7

    Conserved Domains (2) summary
    cd00063
    Location:631 → 728
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:97 → 190
    Ig; Immunoglobulin domain

  7. XM_006509872.5 → XP_006509935.1  contactin-5 isoform X5

    See identical proteins and their annotated locations for XP_006509935.1

    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  8. XM_006509866.5 → XP_006509929.1  contactin-5 isoform X4

    See identical proteins and their annotated locations for XP_006509929.1

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  9. XM_036154968.1 → XP_036010861.1  contactin-5 isoform X12

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (4) summary
    cd00063
    Location:388 → 485
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:17 → 22
    Ig; Ig strand A [structural motif]
    cd04969
    Location:197 → 285
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:17 → 104
    Ig; Immunoglobulin domain

  10. XM_036154967.1 → XP_036010860.1  contactin-5 isoform X11

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (3) summary
    cd00063
    Location:417 → 514
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:17 → 22
    Ig; Ig strand A [structural motif]
    cl11960
    Location:17 → 104
    Ig; Immunoglobulin domain

  11. XM_036154961.1 → XP_036010854.1  contactin-5 isoform X10

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (4) summary
    cd00063
    Location:456 → 553
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cd04969
    Location:265 → 353
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  12. XM_036154956.1 → XP_036010849.1  contactin-5 isoform X9

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (3) summary
    cd00063
    Location:485 → 582
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  13. XM_036154945.1 → XP_036010838.1  contactin-5 isoform X5

    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  14. XM_036154941.1 → XP_036010834.1  contactin-5 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  15. XM_036154963.1 → XP_036010856.1  contactin-5 isoform X10

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (4) summary
    cd00063
    Location:456 → 553
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cd04969
    Location:265 → 353
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  16. XM_036154947.1 → XP_036010840.1  contactin-5 isoform X5

    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  17. XM_036154942.1 → XP_036010835.1  contactin-5 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  18. XM_036154965.1 → XP_036010858.1  contactin-5 isoform X10

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (4) summary
    cd00063
    Location:456 → 553
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cd04969
    Location:265 → 353
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  19. XM_036154962.1 → XP_036010855.1  contactin-5 isoform X10

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (4) summary
    cd00063
    Location:456 → 553
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cd04969
    Location:265 → 353
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  20. XM_036154957.1 → XP_036010850.1  contactin-5 isoform X9

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (3) summary
    cd00063
    Location:485 → 582
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  21. XM_036154949.1 → XP_036010842.1  contactin-5 isoform X5

    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  22. XM_011242366.3 → XP_011240668.1  contactin-5 isoform X4

    See identical proteins and their annotated locations for XP_011240668.1

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  23. XM_036154943.1 → XP_036010836.1  contactin-5 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  24. XM_036154955.1 → XP_036010848.1  contactin-5 isoform X8

    Conserved Domains (4) summary
    cd00063
    Location:602 → 699
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:411 → 499
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  25. XM_036154948.1 → XP_036010841.1  contactin-5 isoform X5

    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  26. XM_006509869.4 → XP_006509932.1  contactin-5 isoform X4

    See identical proteins and their annotated locations for XP_006509932.1

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  27. XM_036154966.1 → XP_036010859.1  contactin-5 isoform X10

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (4) summary
    cd00063
    Location:456 → 553
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cd04969
    Location:265 → 353
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  28. XM_036154959.1 → XP_036010852.1  contactin-5 isoform X9

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (3) summary
    cd00063
    Location:485 → 582
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  29. XM_036154944.1 → XP_036010837.1  contactin-5 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  30. XM_036154946.1 → XP_036010839.1  contactin-5 isoform X5

    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  31. XM_006509868.3 → XP_006509931.1  contactin-5 isoform X4

    See identical proteins and their annotated locations for XP_006509931.1

    Conserved Domains (3) summary
    cd00063
    Location:699 → 796
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  32. XM_036154964.1 → XP_036010857.1  contactin-5 isoform X10

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (4) summary
    cd00063
    Location:456 → 553
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cd04969
    Location:265 → 353
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  33. XM_036154958.1 → XP_036010851.1  contactin-5 isoform X9

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (3) summary
    cd00063
    Location:485 → 582
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

  34. XM_036154951.1 → XP_036010844.1  contactin-5 isoform X5

    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  35. XM_036154950.1 → XP_036010843.1  contactin-5 isoform X5

    UniProtKB/Swiss-Prot
    E0CYC2, P68500
    Conserved Domains (4) summary
    cd00063
    Location:670 → 767
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:99 → 103
    Ig; Ig strand A [structural motif]
    cd04969
    Location:479 → 567
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:97 → 192
    Ig; Immunoglobulin domain

  36. XM_036154940.1 → XP_036010833.1  contactin-5 isoform X3

    Conserved Domains (7) summary
    cd00063
    Location:977 → 1074
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00552
    Location:243 → 288
    IN_DBD_C; Integrase DNA binding domain
    pfam00665
    Location:78 → 172
    rve; Integrase core domain
    pfam02022
    Location:26 → 62
    Integrase_Zn; Integrase Zinc binding domain
    cd00096
    Location:406 → 410
    Ig; Ig strand A [structural motif]
    cd04969
    Location:786 → 874
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:404 → 499
    Ig; Immunoglobulin domain

  37. XM_036154938.1 → XP_036010831.1  contactin-5 isoform X1

    Conserved Domains (6) summary
    cd00063
    Location:1006 → 1103
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00552
    Location:243 → 288
    IN_DBD_C; Integrase DNA binding domain
    pfam00665
    Location:78 → 172
    rve; Integrase core domain
    pfam02022
    Location:26 → 62
    Integrase_Zn; Integrase Zinc binding domain
    cd00096
    Location:406 → 410
    Ig; Ig strand A [structural motif]
    cl11960
    Location:404 → 499
    Ig; Immunoglobulin domain

  38. XM_036154960.1 → XP_036010853.1  contactin-5 isoform X9

    UniProtKB/TrEMBL
    Q3TRE5
    Conserved Domains (3) summary
    cd00063
    Location:485 → 582
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:85 → 90
    Ig; Ig strand A [structural motif]
    cl11960
    Location:85 → 172
    Ig; Immunoglobulin domain

RNA

  1. XR_004935436.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P68500.2 GenPept UniProtKB/Swiss-Prot:P68500

Gene LinkOut

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