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C06B8.7 SRCR domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 246012, updated on 4-Jan-2025

Summary

Official Symbol
C06B8.7
Official Full Name
SRCR domain-containing protein
Primary source
WormBase:WBGene00007372
Locus tag
CELE_C06B8.7
See related
AllianceGenome:WB:WBGene00007372
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in cell-cell junction maintenance. Predicted to be active in membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

See C06B8.7 in Genome Data Viewer
Location:
chromosome: V
Exon count:
25
Sequence:
Chromosome: V; NC_003283.11 (15498734..15511421)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Seven TM Receptor Neighboring gene Serpentine Receptor, class H Neighboring gene Serpentine Receptor, class H Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Gly Neighboring gene Large ribosomal subunit protein eL38 Neighboring gene Neur_chan_memb domain-containing protein;Neurotransmitter-gated ion-channel transmembrane domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Val

General gene information

Markers

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in cell-cell junction maintenance IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
SRCR domain-containing protein
NP_506859.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    15498734..15511421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_074458.7NP_506859.2  SRCR domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506859.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O17575
    Conserved Domains (5) summary
    smart00202
    Location:10351143
    SR; Scavenger receptor Cys-rich
    pfam00059
    Location:27212817
    Lectin_C; Lectin C-type domain
    pfam00530
    Location:10481142
    SRCR; Scavenger receptor cysteine-rich domain
    pfam05048
    Location:24082552
    NosD; Periplasmic copper-binding protein (NosD)
    pfam13229
    Location:248380
    Beta_helix; Right handed beta helix region