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rpb6 DNA-directed RNA polymerase subunit Rpb6 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539083, updated on 18-Sep-2024

Summary

Official Symbol
rpb6
Official Full Name
DNA-directed RNA polymerase subunit Rpb6
Primary source
PomBase:SPCC1020.04c
Locus tag
SPOM_SPCC1020.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
rpo15
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Genomic context

See rpb6 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (783037..784077)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene phosphoprotein phosphatase Neighboring gene retrotransposable element/transposon Tf2-type Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mitochondrial iron ion transporter Neighboring gene outer kinetochore KNL network protein, KNL-1 family member, blinkin, Spc7

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to DNA-directed 5'-3' RNA polymerase activity IGI
Inferred from Genetic Interaction
more info
PubMed 
contributes_to RNA polymerase I activity IBA
Inferred from Biological aspect of Ancestor
more info
 
contributes_to RNA polymerase II activity IBA
Inferred from Biological aspect of Ancestor
more info
 
contributes_to RNA polymerase III activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription elongation EXP
Inferred from Experiment
more info
PubMed 
involved_in tRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transcription by RNA polymerase I IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transcription elongation by RNA polymerase I EXP
Inferred from Experiment
more info
PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of RNA polymerase I complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of RNA polymerase I complex IGI
Inferred from Genetic Interaction
more info
PubMed 
part_of RNA polymerase II, core complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of RNA polymerase II, core complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of RNA polymerase II, core complex IGI
Inferred from Genetic Interaction
more info
PubMed 
part_of RNA polymerase II, holoenzyme EXP
Inferred from Experiment
more info
PubMed 
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of RNA polymerase III complex IGI
Inferred from Genetic Interaction
more info
PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

Preferred Names
DNA-directed RNA polymerase subunit Rpb6

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    783037..784077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022947.3NP_587956.1  DNA-directed RNA polymerase subunit Rpb6 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587956.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P36595
    Conserved Domains (1) summary
    PLN00152
    Location:3142
    PLN00152; DNA-directed RNA polymerase; Provisional