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gdh1 NADP-specific glutamate dehydrogenase Gdh1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539147, updated on 18-Sep-2024

Summary

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Official Symbol
gdh1
Official Full Name
NADP-specific glutamate dehydrogenase Gdh1
Primary source
PomBase:SPCC622.12c
Locus tag
SPOM_SPCC622.12C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See gdh1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (1419131..1421203, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene exocyst complex subunit Sec5 Neighboring gene ncRNA Neighboring gene plasma membrane LMBR1-like multi-pass membrane protein, human LMBRD2 ortholog, implicated in signaling Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TTT co-chaperone complex, armadillo-type fold subunit Tti1 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The enzymes of ammonia assimilation in Schizosaccharomyces spp. and in Saccharomycodes ludwigii. Johnson B, et al. J Gen Microbiol, 1974 Nov. PMID 4154968
  2. Filamentous invasive growth of mutants of the genes encoding ammonia-metabolizing enzymes in the fission yeast Schizosaccharomyces pombe. Sasaki Y, et al. PLoS One, 2017. PMID 28982178, Free PMC Article
  3. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
  4. Expanded Interactome of the Intrinsically Disordered Protein Dss1. Schenstrøm SM, et al. Cell Rep, 2018 Oct 23. PMID 30355493, Free PMC Article
  5. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables glutamate dehydrogenase (NADP+) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glutamate dehydrogenase (NADP+) activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate biosynthetic process EXP
Inferred from Experiment
more info
 PubMed 
involved_in ammonia assimilation cycle IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in glutamate biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
NADP-specific glutamate dehydrogenase Gdh1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1419131..1421203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023174.3 → NP_588184.1  NADP-specific glutamate dehydrogenase Gdh1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588184.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P78804
    Conserved Domains (3) summary
    cd05313
    Location:180 → 449
    NAD_bind_2_Glu_DH; NAD(P) binding domain of glutamate dehydrogenase, subgroup 2
    PRK09414
    Location:4 → 448
    PRK09414; glutamate dehydrogenase; Provisional
    pfam02812
    Location:42 → 170
    ELFV_dehydrog_N; Glu/Leu/Phe/Val dehydrogenase, dimerization domain
Nucleotide Protein
Heading Accession and Version

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