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utp23 rRNA processing protein Utp23 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539158, updated on 18-Sep-2024

Summary

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Official Symbol
utp23
Official Full Name
rRNA processing protein Utp23
Primary source
PomBase:SPCC18.12c
Locus tag
SPOM_SPCC18.12C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See utp23 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003421.2 (1977107..1978532, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pyridoxine-pyridoxal-pyridoxamine kinase Neighboring gene ncRNA Neighboring gene Set1C complex and Lid2 complex subunit, Dpy-30 domain Sdc1 Neighboring gene tRNA (guanine-N7-)-methyltransferase subunit Trm82 Neighboring gene ncRNA Neighboring gene 60S ribosomal protein uL10 Neighboring gene uncharacterized protein Neighboring gene WD repeat-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA. Zhang K, et al. Science, 2011 Mar 25. PMID 21436456, Free PMC Article
  2. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
  3. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA nuclease activity ISM
Inferred from Sequence Model
more info
  
enables small ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in rRNA processing ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in nucleolus HDA PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
rRNA processing protein Utp23

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1977107..1978532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023382.3 → NP_588391.1  rRNA processing protein Utp23 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588391.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74862
    Conserved Domains (1) summary
    cd09865
    Location:4 → 150
    PIN_Utp23; PIN domain of rRNA-processing protein, Utp23 (YOR004W), and other fungal homologs
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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