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srp54 signal recognition particle subunit Srp54 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539290, updated on 18-Sep-2024

Summary

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Official Symbol
srp54
Official Full Name
signal recognition particle subunit Srp54
Primary source
PomBase:SPCC188.06c
Locus tag
SPOM_SPCC188.06C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See srp54 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (1482990..1485200, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene Ndc80 complex subunit Spc25 Neighboring gene condensin complex non-SMC subunit Cnd3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene shelterin complex HEAT repeat subunit Ccq1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of RNA sequences and structural elements required for assembly of fission yeast SRP54 protein with signal recognition particle RNA. Selinger D, et al. Mol Cell Biol, 1993 Mar. PMID 8382769, Free PMC Article
  2. The Srp54 GTPase is essential for protein export in the fission yeast Schizosaccharomyces pombe. Althoff SM, et al. Mol Cell Biol, 1994 Dec. PMID 7969124, Free PMC Article
  3. Genetic and biochemical analysis of the fission yeast ribonucleoprotein particle containing a homolog of Srp54p. Selinger D, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041618, Free PMC Article
  4. A large complex mediated by Moc1, Moc2 and Cpc2 regulates sexual differentiation in fission yeast. Paul SK, et al. FEBS J, 2009 Sep. PMID 19682301
  5. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 7S RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables 7S RNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables endoplasmic reticulum signal peptide binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum HDA PubMed 
part_of signal recognition particle, endoplasmic reticulum targeting IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of signal recognition particle, endoplasmic reticulum targeting IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
signal recognition particle subunit Srp54

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1482990..1485200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023199.3 → NP_588209.1  signal recognition particle subunit Srp54 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588209.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P21565
    Conserved Domains (4) summary
    TIGR01425
    Location:2 → 426
    SRP54_euk; signal recognition particle protein SRP54
    pfam00448
    Location:102 → 293
    SRP54; SRP54-type protein, GTPase domain
    pfam02881
    Location:6 → 83
    SRP54_N; SRP54-type protein, helical bundle domain
    pfam02978
    Location:325 → 428
    SRP_SPB; Signal peptide binding domain
Nucleotide Protein
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