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snp27 U4/U5/U6 small nuclear ribonucleoprotein complex subunit [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539361, updated on 18-Sep-2024

Summary

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Official Symbol
snp27
Official Full Name
U4/U5/U6 small nuclear ribonucleoprotein complex subunit
Primary source
PomBase:SPCC162.01c
Locus tag
SPOM_SPCC162.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See snp27 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (1587677..1588649)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene AMP-binding dehydrogenase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene alcohol dehydrogenase Adh1 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article
  2. Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. Ren L, et al. PLoS One, 2011 Feb 28. PMID 21386897, Free PMC Article
  3. SR protein kinases promote splicing of nonconsensus introns. Lipp JJ, et al. Nat Struct Mol Biol, 2015 Aug. PMID 26167880
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding NAS
Non-traceable Author Statement
more info
  
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
U4/U5/U6 small nuclear ribonucleoprotein complex subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1587677..1588649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023233.3 → NP_588243.1  U4/U5/U6 small nuclear ribonucleoprotein complex subunit [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588243.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74418
    Conserved Domains (1) summary
    pfam08648
    Location:93 → 241
    DUF1777; Protein of unknown function (DUF1777)
Nucleotide Protein
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