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tcb2 tricalbin, C2 domain protein (phospholipid binding) ER-plasma membrane tethering protein Tcb2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539477, updated on 18-Sep-2024

Summary

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Official Symbol
tcb2
Official Full Name
tricalbin, C2 domain protein (phospholipid binding) ER-plasma membrane tethering protein Tcb2
Primary source
PomBase:SPCP31B10.06
Locus tag
SPOM_SPCP31B10.06
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
mug190
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Genomic context

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See tcb2 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (532657..537202)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tyrosyl-DNA phosphodiesterase Tdp1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene translation elongation factor 2 eft202 Neighboring gene ncRNA Neighboring gene 60S ribosomal protein eL33

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of hsp16 in response to nucleotide depletion is regulated via the spc1 MAPK pathway in Schizosaccharomyces pombe. Taricani L, et al. Nucleic Acids Res, 2001 Jul 15. PMID 11452028, Free PMC Article
  2. Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries. Wang J, et al. Genes Dev, 2013 Sep 1. PMID 24013502, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables phospholipid binding ISM
Inferred from Sequence Model
more info
  
enables protein-membrane adaptor activity IC
Inferred by Curator
more info
  
Process Evidence Code Pubs
involved_in endoplasmic reticulum-plasma membrane tethering ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cortical endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
is_active_in cytosol HDA PubMed 
is_active_in endoplasmic reticulum HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
tricalbin, C2 domain protein (phospholipid binding) ER-plasma membrane tethering protein Tcb2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    532657..537202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022855.3 → NP_587862.1  tricalbin, C2 domain protein (phospholipid binding) ER-plasma membrane tethering protein Tcb2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587862.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9USG8
    Conserved Domains (3) summary
    cd04041
    Location:469 → 578
    C2A_fungal; C2 domain first repeat; fungal group
    cd04052
    Location:693 → 801
    C2B_Tricalbin-like; C2 domain second repeat present in Tricalbin-like proteins
    COG5038
    Location:7 → 1188
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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