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xan1 alpha-ketoglutarate-dependent xanthine dioxygenase Xan1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539549, updated on 18-Sep-2024

Summary

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Official Symbol
xan1
Official Full Name
alpha-ketoglutarate-dependent xanthine dioxygenase Xan1
Primary source
PomBase:SPCC576.01c
Locus tag
SPOM_SPCC576.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPCPB1C11.04c
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Genomic context

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See xan1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (2079421..2080662, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cysteine transporter Neighboring gene uncharacterized protein Neighboring gene hydantoin racemase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Convergent evolution of hydroxylation mechanisms in the fungal kingdom: molybdenum cofactor-independent hydroxylation of xanthine via alpha-ketoglutarate-dependent dioxygenases. Cultrone A, et al. Mol Microbiol, 2005 Jul. PMID 15948966
  2. The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components. Salas-Pino S, et al. J Cell Biol, 2017 Nov 6. PMID 28974540, Free PMC Article
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables alpha-ketoglutarate-dependent xanthine dioxygenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables iron ion binding TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in xanthine catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent xanthine dioxygenase Xan1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2079421..2080662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023418.1 → NP_588427.2  alpha-ketoglutarate-dependent xanthine dioxygenase Xan1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588427.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74885, Q9C0U8
    Conserved Domains (2) summary
    COG2175
    Location:135 → 406
    TauD; Taurine dioxygenase, alpha-ketoglutarate-dependent [Secondary metabolites biosynthesis, transport and catabolism]
    pfam02668
    Location:49 → 394
    TauD; Taurine catabolism dioxygenase TauD, TfdA family
Nucleotide Protein
Heading Accession and Version

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