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chr4 SEL1/TPR repeat protein1, 3-beta-glucan synthase regulatory factor Chf3/Chr4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539716, updated on 14-Nov-2024

Summary

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Official Symbol
chr4
Official Full Name
SEL1/TPR repeat protein1, 3-beta-glucan synthase regulatory factor Chf3/Chr4
Primary source
PomBase:SPBC1289.01c
Locus tag
SPOM_SPBC1289.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
cfh3; SPBC1539.11c
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Genomic context

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See chr4 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (4381386..4383771, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein Nop16 Neighboring gene ncRNA Neighboring gene U2 snRNP-associated protein Uap2 Neighboring gene ncRNA Neighboring gene Ran GTPase Spi1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chr4, a Schizosaccharomyces pombe homologue of the Saccharomyces cerevisiae Chs4p/Skt5p protein, is related to septum formation and is required for the proper localization of Chs2. Matsuo Y, et al. Yeast, 2004 Sep. PMID 15449309
  2. The fission yeast SEL1 domain protein Cfh3p: a novel regulator of the glucan synthase Bgs1p whose function is more relevant under stress conditions. Sharifmoghadam MR, et al. J Biol Chem, 2009 Apr 24. PMID 19237545, Free PMC Article
  3. The integrity of the cytokinesis machinery under stress conditions requires the glucan synthase Bgs1p and its regulator Cfh3p. Sharifmoghadam MR, et al. PLoS One, 2012. PMID 22905165, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. cytokinesis machinery integrity under stress conditions requires the glucan synthase Bgs1p and its regulator Cfh3p
    Title: The integrity of the cytokinesis machinery under stress conditions requires the glucan synthase Bgs1p and its regulator Cfh3p.
  2. fission yeast SEL1 domain protein Cfh3p is a novel regulator of the glucan synthase Bgs1p whose function is more relevant under stress conditions
    Title: The fission yeast SEL1 domain protein Cfh3p: a novel regulator of the glucan synthase Bgs1p whose function is more relevant under stress conditions.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in fungal-type cell wall beta-glucan biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in fungal-type cell wall organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitotic division septum assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IPI
Inferred from Physical Interaction
more info
 PubMed 
is_active_in cell cortex of cell tip IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cell division site HDA PubMed 
is_active_in cell tip IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in division septum IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
SEL1/TPR repeat protein1, 3-beta-glucan synthase regulatory factor Chf3/Chr4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4381386..4383771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023845.4 → NP_596825.2  SEL1/TPR repeat protein1, 3-beta-glucan synthase regulatory factor Chf3/Chr4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596825.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94614, Q7LKX7, Q9Y7Z0
    Conserved Domains (5) summary
    COG0457
    Location:198 → 348
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0790
    Location:282 → 557
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:330 → 359
    SLR; SLR repeat [structural motif]
    pfam00515
    Location:316 → 345
    TPR_1; Tetratricopeptide repeat
    pfam08238
    Location:278 → 314
    Sel1; Sel1 repeat
Nucleotide Protein
Heading Accession and Version

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