U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

vps10 vacuolar protein sorting receptor vps10 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539861, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
vps10
Official Full Name
vacuolar protein sorting receptor vps10
Primary source
PomBase:SPBC16C6.06
Locus tag
SPOM_SPBC16C6.06
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
pep1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See vps10 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (4336986..4341614)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein Dbl6 Neighboring gene ncRNA Neighboring gene mitochondrial translation initiation factor Neighboring gene ncRNA Neighboring gene proteasome regulatory subunit Rpt1 Neighboring gene ncRNA Neighboring gene ubiquinol-cytochrome-c reductase complex subunit 8

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. CUE domain-containing protein Vps901 is required for vacuolar protein transport in Schizosaccharomyces pombe. Nakase M, et al. Biosci Biotechnol Biochem, 2012. PMID 22484924
  2. S. pombe btn1, the orthologue of the Batten disease gene CLN3, is required for vacuole protein sorting of Cpy1p and Golgi exit of Vps10p. Codlin S, et al. J Cell Sci, 2009 Apr 15. PMID 19299465, Free PMC Article
  3. Ent3 and GGA adaptors facilitate diverse anterograde and retrograde trafficking events to and from the prevacuolar endosome. Yanguas F, et al. Sci Rep, 2019 Jul 24. PMID 31341193, Free PMC Article
  4. Vacuolar protein sorting receptor in Schizosaccharomyces pombe. Iwaki T, et al. Microbiology (Reading), 2006 May. PMID 16622069
  5. Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis. Snaith HA, et al. J Cell Sci, 2011 Jul 1. PMID 21652630, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. S. pombe btn1, the orthologue of the Batten disease gene CLN3, is required for vacuole protein sorting of Cpy1p and Golgi exit of Vps10p.
    Title: S. pombe btn1, the orthologue of the Batten disease gene CLN3, is required for vacuole protein sorting of Cpy1p and Golgi exit of Vps10p.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables signal sequence binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in Golgi to endosome transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in Golgi to endosome transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in Golgi to vacuole transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in Golgi to vacuole transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein targeting to vacuole IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in late endosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vacuolar protein sorting receptor vps10

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4336986..4341614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023825.3 → NP_596804.1  vacuolar protein sorting receptor vps10 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596804.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O42930
    Conserved Domains (3) summary
    smart00602
    Location:726 → 1348
    VPS10; VPS10 domain
    cd15482
    Location:735 → 846
    Sialidase_non-viral; Non-viral sialidases
    pfam15901
    Location:1179 → 1348
    Sortilin_C; Sortilin, neurotensin receptor 3, C-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials