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ykt6 SNARE protein Ykt6 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539873, updated on 18-Sep-2024

Summary

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Official Symbol
ykt6
Official Full Name
SNARE protein Ykt6
Primary source
PomBase:SPBC13G1.11
Locus tag
SPOM_SPBC13G1.11
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ykt6 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (3750124..3751325)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein smp2 Neighboring gene ESCRT III complex subunit Did2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and functional interaction between Ryh1 and Ypt3: two Rab GTPases that function in S. pombe secretory pathway. He Y, et al. Genes Cells, 2006 Mar. PMID 16483310
  2. Isolation of a fission yeast mutant that is sensitive to valproic acid and defective in the gene encoding Ric1, a putative component of Ypt/Rab-specific GEF for Ryh1 GTPase. Ma Y, et al. Mol Genet Genomics, 2010 Sep. PMID 20623139
  3. Analysis of the SNARE Stx8 recycling reveals that the retromer-sorting motif has undergone evolutionary divergence. Yanguas F, et al. PLoS Genet, 2021 Mar. PMID 33788833, Free PMC Article
  4. A defect in protein farnesylation suppresses a loss of Schizosaccharomyces pombe tsc2+, a homolog of the human gene predisposing to tuberous sclerosis complex. Nakase Y, et al. Genetics, 2006 Jun. PMID 16624901, Free PMC Article
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular protein transport NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endomembrane system IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SNARE protein Ykt6

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3750124..3751325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022482.3 → NP_596561.1  SNARE protein Ykt6 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596561.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60073
    Conserved Domains (3) summary
    COG5143
    Location:3 → 197
    SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
    cd15867
    Location:135 → 194
    R-SNARE_YKT6; SNARE motif of YKT6
    pfam13774
    Location:44 → 114
    Longin; Regulated-SNARE-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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