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rbd1 rhomboid protease [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540108, updated on 18-Sep-2024

Summary

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Official Symbol
rbd1
Official Full Name
rhomboid protease
Primary source
PomBase:SPBC13E7.11
Locus tag
SPOM_SPBC13E7.11
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
ppp72; rh1; SPBC30D10.19c
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Genomic context

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See rbd1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3059113..3060237)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene RNA polymerase II-associated Paf1 complex protein Leo1 Neighboring gene verprolin Neighboring gene transcription factor TFIIIB subunit Brf1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 60S ribosomal protein uL1 Neighboring gene beta-glucan synthase adaptor protein Smi1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
  2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables serine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mitochondrial protein processing IC
Inferred by Curator
more info
  
involved_in signal peptide processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
rhomboid protease

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3059113..3060237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022186.4 → NP_596266.2  rhomboid protease [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596266.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14364, Q9P6Q9
    Conserved Domains (1) summary
    pfam01694
    Location:122 → 269
    Rhomboid; Rhomboid family
Nucleotide Protein
Heading Accession and Version

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