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shy1 cytochrome c oxidase assembly protein Shy1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540192, updated on 14-Nov-2024

Summary

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Official Symbol
shy1
Official Full Name
cytochrome c oxidase assembly protein Shy1
Primary source
PomBase:SPBC1215.01
Locus tag
SPOM_SPBC1215.01
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See shy1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (1505098..1509451)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene tRNA-Thr Neighboring gene 5S ribosomal RNA Neighboring gene ncRNA Neighboring gene NatB N-acetyltransferase complex regulatory subunit Naa25 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene UBA/EH/EF hand domain protein Ucp8 Neighboring gene 60S ribosomal protein eL43

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Shy1, the Schizosaccharomyces pombe homolog of human SURF1. Luo Y, et al. Sci Rep, 2024 Sep 17. PMID 39289458, Free PMC Article
  2. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
  3. SR protein kinases promote splicing of nonconsensus introns. Lipp JJ, et al. Nat Struct Mol Biol, 2015 Aug. PMID 26167880
  4. Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Stewart EV, et al. Mol Cell, 2011 Apr 22. PMID 21504829, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables unfolded protein binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in mitochondrial cytochrome c oxidase assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitochondrial respirasome assembly EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
is_active_in mitochondrial inner membrane EXP
Inferred from Experiment
more info
 PubMed 
is_active_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
cytochrome c oxidase assembly protein Shy1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1505098..1509451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021525.3 → NP_595631.1  cytochrome c oxidase assembly protein Shy1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595631.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9Y810
    Conserved Domains (1) summary
    COG3346
    Location:24 → 281
    Shy1; Cytochrome oxidase assembly protein ShyY1 [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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