U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

vrs1 valine--tRNA (Val) ligase Vrs1/Vas1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540197, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
vrs1
Official Full Name
valine--tRNA (Val) ligase Vrs1/Vas1
Primary source
PomBase:SPBC1709.02c
Locus tag
SPOM_SPBC1709.02C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPBC1734.18c; ValRS1; vas1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See vrs1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_003423.3 (1098188..1101489, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene RSC complex bromodomain subunit Rsc4 Neighboring gene SIN3 family co-repressor, Clr6 and Rpd3L histone deacetylase complex subunit Pst3 Neighboring gene ncRNA Neighboring gene chitin synthase-like protein 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Schizosaccharomyces pombe possesses two paralogous valyl-tRNA synthetase genes of mitochondrial origin. Chiu WC, et al. Mol Biol Evol, 2010 Jun. PMID 20106903
  2. Proteome-wide search for PP2A substrates in fission yeast. Bernal M, et al. Proteomics, 2014 Jun. PMID 24634168
  3. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
  4. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article
  5. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding ISM
Inferred from Sequence Model
more info
  
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
  
enables valine-tRNA ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables valine-tRNA ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
  
involved_in cytosolic valyl-tRNA aminoacylation EXP
Inferred from Experiment
more info
 PubMed 
involved_in valyl-tRNA aminoacylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IGI
Inferred from Genetic Interaction
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
valine--tRNA (Val) ligase Vrs1/Vas1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1098188..1101489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021343.3 → NP_595435.1  valine--tRNA (Val) ligase Vrs1/Vas1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595435.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O75005
    Conserved Domains (4) summary
    cd07962
    Location:728 → 865
    Anticodon_Ia_Val; Anticodon-binding domain of valyl tRNA synthetases
    cd00817
    Location:130 → 728
    ValRS_core; catalytic core domain of valyl-tRNA synthetases
    PTZ00419
    Location:82 → 977
    PTZ00419; valyl-tRNA synthetase-like protein; Provisional
    pfam13603
    Location:313 → 438
    tRNA-synt_1_2; Leucyl-tRNA synthetase, Domain 2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials