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pdp1 PWWP domain protein Pdp1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540354, updated on 18-Sep-2024

Summary

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Official Symbol
pdp1
Official Full Name
PWWP domain protein Pdp1
Primary source
PomBase:SPBC29A3.13
Locus tag
SPOM_SPBC29A3.13
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See pdp1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2059635..2062284, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene AAA family ATPase Gcn20 Neighboring gene F1-ATPase subunit H Neighboring gene carboxylic acid transporter Neighboring gene ncRNA Neighboring gene 40S ribosomal protein uS4 Neighboring gene ncRNA Neighboring gene telomerase reverse transcriptase 1 protein Trt1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Solution structure of the Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA. Qiu Y, et al. Biochem J, 2012 Mar 15. PMID 22150589
  2. Regulation of Set9-mediated H4K20 methylation by a PWWP domain protein. Wang Y, et al. Mol Cell, 2009 Feb 27. PMID 19250904, Free PMC Article
  3. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article
  4. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
  5. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables H4K20me3 modified histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables double-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables methylated histone binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling ISM
Inferred from Sequence Model
more info
  
involved_in regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of NuA3 histone acetyltransferase complex ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
PWWP domain protein Pdp1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2059635..2062284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021745.3 → NP_595841.1  PWWP domain protein Pdp1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595841.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O59676, Q9USE8
    Conserved Domains (1) summary
    cd05840
    Location:50 → 140
    SPBC215_ISWI_like; The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind ...
Nucleotide Protein
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