U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tri1 CAF1 family ribonuclease [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540515, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
tri1
Official Full Name
CAF1 family ribonuclease
Primary source
PomBase:SPBC29A10.09c
Locus tag
SPOM_SPBC29A10.09C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tri1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2554177..2556947, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nucleoporin, transmembrane ring glycoprotein subunit Pom152 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 1,3-beta-glucanosyltransferase Gas2 Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase Dbl8 Neighboring gene ncRNA Neighboring gene guanyl-nucleotide exchange factor Muk1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Tailing and degradation of Argonaute-bound small RNAs protect the genome from uncontrolled RNAi. Pisacane P, et al. Nat Commun, 2017 May 25. PMID 28541282, Free PMC Article
  2. Argonaute and Triman generate dicer-independent priRNAs and mature siRNAs to initiate heterochromatin formation. Marasovic M, et al. Mol Cell, 2013 Oct 24. PMID 24095277
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables 3'-5'-RNA exonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables poly(A)-specific ribonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in priRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in priRNA 3'-end processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulatory ncRNA-mediated heterochromatin formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in siRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in siRNA 3'-end processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in condensed chromosome, centromeric region EXP
Inferred from Experiment
more info
 PubMed 
is_active_in nucleus EXP
Inferred from Experiment
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CAF1 family ribonuclease

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2554177..2556947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021965.3 → NP_596054.1  CAF1 family ribonuclease [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596054.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94386
    Conserved Domains (1) summary
    pfam04857
    Location:3 → 394
    CAF1; CAF1 family ribonuclease
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials