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dbl8 ATP-dependent RNA helicase Dbl8 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540523, updated on 18-Sep-2024

Summary

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Official Symbol
dbl8
Official Full Name
ATP-dependent RNA helicase Dbl8
Primary source
PomBase:SPBC29A10.10c
Locus tag
SPOM_SPBC29A10.10C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See dbl8 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2557150..2563169, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 1,3-beta-glucanosyltransferase Gas2 Neighboring gene CAF1 family ribonuclease Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene guanyl-nucleotide exchange factor Muk1 Neighboring gene ncRNA Neighboring gene oxidative stress transcription coactivator/ribosome recycling protein Oxs1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Senataxin homologue Sen1 is required for efficient termination of RNA polymerase III transcription. Rivosecchi J, et al. EMBO J, 2019 Aug 15. PMID 31294478, Free PMC Article
  2. The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection. Lemay JF, et al. Genes Dev, 2016 Jul 1. PMID 27401558, Free PMC Article
  3. A proteome-wide visual screen identifies fission yeast proteins localizing to DNA double-strand breaks. Yu Y, et al. DNA Repair (Amst), 2013 Jun 1. PMID 23628481
  4. Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth. Rallis C, et al. Biol Open, 2014 Feb 15. PMID 24463365, Free PMC Article
  5. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IC
Inferred by Curator
more info
  
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA helicase activity ISO
Inferred from Sequence Orthology
more info
  
enables transcription termination site sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in RNA 3'-end processing ISO
Inferred from Sequence Orthology
more info
  
involved_in tRNA metabolic process NAS
Non-traceable Author Statement
more info
  
involved_in termination of RNA polymerase II transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
NOT part_of Nrd1 complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nuclear body IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolar chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in site of double-strand break IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase Dbl8

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2557150..2563169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021966.3 → NP_596055.1  ATP-dependent RNA helicase Dbl8 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596055.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94387
    Conserved Domains (4) summary
    pfam12726
    Location:75 → 784
    SEN1_N; SEN1 N terminal
    pfam13086
    Location:1270 → 1553
    AAA_11; AAA domain
    pfam13087
    Location:1560 → 1756
    AAA_12; AAA domain
    pfam13245
    Location:1277 → 1355
    AAA_19; Part of AAA domain
Nucleotide Protein
Heading Accession and Version

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