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utp16 U3 snoRNP-associated protein Utp16 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541361, updated on 18-Sep-2024

Summary

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Official Symbol
utp16
Official Full Name
U3 snoRNP-associated protein Utp16
Primary source
PomBase:SPBP8B7.10c
Locus tag
SPOM_SPBP8B7.10C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See utp16 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (3650361..3651820, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene karyopherin exportin-T Los1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquitin protease cofactor Nxt3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CENP-H-like protein Fta3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  2. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
  3. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
  4. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  5. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables snoRNA binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in nucleolus HDA PubMed 
is_active_in nucleus HDA PubMed 
part_of small-subunit processome ISO
Inferred from Sequence Orthology
more info
  
part_of sno(s)RNA-containing ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
U3 snoRNP-associated protein Utp16

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3650361..3651820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022438.2 → NP_596517.2  U3 snoRNP-associated protein Utp16 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596517.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94259
    Conserved Domains (1) summary
    pfam08297
    Location:222 → 309
    U3_snoRNA_assoc; U3 snoRNA associated
Nucleotide Protein
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