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cdb4 peptidase family curved DNA-binding protein Cdb4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541817, updated on 18-Sep-2024

Summary

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Official Symbol
cdb4
Official Full Name
peptidase family curved DNA-binding protein Cdb4
Primary source
PomBase:SPAC23H4.09
Locus tag
SPOM_SPAC23H4.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See cdb4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (1591873..1593095, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene centromere localized protein Cnl2 Neighboring gene ncRNA Neighboring gene bifunctional thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase Neighboring gene RNA polymerase II nuclear import protein Iwr1 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and biochemical analysis of a mitochondrial endonuclease of Podospora anserina related to curved-DNA binding proteins. Laquel-Robert P, et al. Biochim Biophys Acta, 2007 Apr. PMID 17188431
  2. A fission yeast gene encoding a protein that preferentially associates with curved DNA. Yamada H, et al. Yeast, 1994 Jul. PMID 7985416
  3. Human Ebp1 rescues the synthetic lethal growth of fission yeast cells lacking Cdb4 and Nup184. Osemwenkhae OP, et al. Genes Cells, 2020 Apr. PMID 32049412
  4. Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries. Wang J, et al. Genes Dev, 2013 Sep 1. PMID 24013502, Free PMC Article
  5. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Human Ebp1 rescues the synthetic lethal growth of fission yeast cells lacking Cdb4 and Nup184.
    Title: Human Ebp1 rescues the synthetic lethal growth of fission yeast cells lacking Cdb4 and Nup184.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables nuclease activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
peptidase family curved DNA-binding protein Cdb4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1591873..1593095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018829.3 → NP_593397.1  peptidase family curved DNA-binding protein Cdb4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593397.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09184
    Conserved Domains (1) summary
    cl00279
    Location:1 → 364
    APP_MetAP; A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity ...
Nucleotide Protein
Heading Accession and Version

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