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smn1 SMN complex subunit Smn1/Gem1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542002, updated on 18-Sep-2024

Summary

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Official Symbol
smn1
Official Full Name
SMN complex subunit Smn1/Gem1
Primary source
PomBase:SPAC2G11.08c
Locus tag
SPOM_SPAC2G11.08C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
yab8
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Genomic context

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See smn1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (822092..822954, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene AAA family ATPase Vps4 Neighboring gene ncRNA Neighboring gene protein phosphatase PP2C catalytic subunit Ptc3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ca(2+) transporter Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Specific splicing defects in S. pombe carrying a degron allele of the Survival of Motor Neuron gene. Campion Y, et al. EMBO J, 2010 Jun 2. PMID 20400941, Free PMC Article
  2. The survival motor neuron protein of Schizosacharomyces pombe. Conservation of survival motor neuron interaction domains in divergent organisms. Paushkin S, et al. J Biol Chem, 2000 Aug 4. PMID 10816558
  3. Characterization of the Schizosaccharomyces pombe orthologue of the human survival motor neuron (SMN) protein. Owen N, et al. Hum Mol Genet, 2000 Mar 22. PMID 10749974
  4. The Schizosaccharomyces pombe protein Yab8p and a novel factor, Yip1p, share structural and functional similarity with the spinal muscular atrophy-associated proteins SMN and SIP1. Hannus S, et al. Hum Mol Genet, 2000 Mar 22. PMID 10749973
  5. Oligomeric Properties of Survival Motor Neuron·Gemin2 Complexes. Gupta K, et al. J Biol Chem, 2015 Aug 14. PMID 26092730, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in spliceosomal snRNP assembly ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of SMN complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SMN complex subunit Smn1/Gem1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    822092..822954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018486.3 → NP_593088.1  SMN complex subunit Smn1/Gem1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593088.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09808
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials