U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tpr1 RNA polymerase II-associated Paf1 complex subunit Tpr1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542077, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
tpr1
Official Full Name
RNA polymerase II-associated Paf1 complex subunit Tpr1
Primary source
PomBase:SPAC27D7.14c
Locus tag
SPOM_SPAC27D7.14C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
ctr9; SPAC637.02c
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tpr1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (4536975..4540359, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene thioredoxin family protein But1 Neighboring gene ncRNA Neighboring gene dynactin microtubule-binding subunit, p150-Glued Ssm4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Spt5 Phosphorylation and the Rtf1 Plus3 Domain Promote Rtf1 Function through Distinct Mechanisms. Chen JJ, et al. Mol Cell Biol, 2020 Jul 14. PMID 32366382, Free PMC Article
  2. Global regulation of heterochromatin spreading by Leo1. Verrier L, et al. Open Biol, 2015 May. PMID 25972440, Free PMC Article
  3. The PAF complex and Prf1/Rtf1 delineate distinct Cdk9-dependent pathways regulating transcription elongation in fission yeast. Mbogning J, et al. PLoS Genet, 2013. PMID 24385927, Free PMC Article
  4. Expanded Interactome of the Intrinsically Disordered Protein Dss1. Schenstrøm SM, et al. Cell Rep, 2018 Oct 23. PMID 30355493, Free PMC Article
  5. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA polymerase II complex binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase I ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in transcription elongation by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription elongation by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Cdc73/Paf1 complex IPI
Inferred from Physical Interaction
more info
 PubMed 
is_active_in nucleus HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
RNA polymerase II-associated Paf1 complex subunit Tpr1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4536975..4540359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020048.3 → NP_594620.1  RNA polymerase II-associated Paf1 complex subunit Tpr1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594620.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O42668, O42796
    Conserved Domains (7) summary
    TIGR02795
    Location:299 → 389
    tol_pal_ybgF; tol-pal system protein YbgF
    sd00006
    Location:667 → 696
    TPR; TPR repeat [structural motif]
    pfam13181
    Location:326 → 356
    TPR_8; Tetratricopeptide repeat
    pfam13414
    Location:174 → 241
    TPR_11; TPR repeat
    pfam13424
    Location:664 → 729
    TPR_12; Tetratricopeptide repeat
    pfam14138
    Location:875 → 916
    COX16; Cytochrome c oxidase assembly protein COX16
    cl23849
    Location:793 → 916
    TrbI; Bacterial conjugation TrbI-like protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials