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rcd1 CCR4-NOT complex subunit Rcd1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542094, updated on 18-Sep-2024

Summary

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Official Symbol
rcd1
Official Full Name
CCR4-NOT complex subunit Rcd1
Primary source
PomBase:SPAC29B12.06c
Locus tag
SPOM_SPAC29B12.06C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
not9
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Genomic context

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See rcd1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (5417366..5419173, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pyridoxal 5'-phosphate synthase (glutamine hydrolyzing) Neighboring gene ncRNA Neighboring gene S-adenosylmethionine-dependent methyltransferase Neighboring gene ncRNA Neighboring gene multidomain vesicle coat component Sec16 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An RNA binding protein negatively controlling differentiation in fission yeast. Tsukahara K, et al. Mol Cell Biol, 1998 Aug. PMID 9671458, Free PMC Article
  2. Novel factor highly conserved among eukaryotes controls sexual development in fission yeast. Okazaki N, et al. Mol Cell Biol, 1998 Feb. PMID 9447985, Free PMC Article
  3. The architecture of the Schizosaccharomyces pombe CCR4-NOT complex. Ukleja M, et al. Nat Commun, 2016 Jan 25. PMID 26804377, Free PMC Article
  4. RNA-binding proteins distinguish between similar sequence motifs to promote targeted deadenylation by Ccr4-Not. Webster MW, et al. Elife, 2019 Jan 2. PMID 30601114, Free PMC Article
  5. mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases. Webster MW, et al. Mol Cell, 2018 Jun 21. PMID 29932902, Free PMC Article

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding NAS
Non-traceable Author Statement
more info
  
Process Evidence Code Pubs
involved_in negative regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in nuclear-transcribed mRNA poly(A) tail shortening IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of CCR4-NOT core complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of CCR4-NOT core complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of Mei2 nuclear dot complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
CCR4-NOT complex subunit Rcd1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5417366..5419173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020415.3 → NP_594984.1  CCR4-NOT complex subunit Rcd1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594984.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q92368
    Conserved Domains (1) summary
    cl02160
    Location:1 → 280
    Rcd1; Cell differentiation family, Rcd1-like
Nucleotide Protein
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