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sec72 Sec7 domain-containing protein sec72 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542107, updated on 14-Nov-2024

Summary

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Official Symbol
sec72
Official Full Name
Sec7 domain-containing protein sec72
Primary source
PomBase:SPAC30.01c
Locus tag
SPOM_SPAC30.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
sec7b
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Genomic context

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See sec72 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (4386842..4392493, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA-binding protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene elongator complex-associated protein Kti2 Neighboring gene ncRNA Neighboring gene translin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The actomyosin ring recruits early secretory compartments to the division site in fission yeast. Vjestica A, et al. Mol Biol Cell, 2008 Mar. PMID 18184749, Free PMC Article
  2. The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components. Salas-Pino S, et al. J Cell Biol, 2017 Nov 6. PMID 28974540, Free PMC Article
  3. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article
  4. Expanded Interactome of the Intrinsically Disordered Protein Dss1. Schenstrøm SM, et al. Cell Rep, 2018 Oct 23. PMID 30355493, Free PMC Article
  5. SR protein kinases promote splicing of nonconsensus introns. Lipp JJ, et al. Nat Struct Mol Biol, 2015 Aug. PMID 26167880

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport ISO
Inferred from Sequence Orthology
more info
  
involved_in intracellular protein transport ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in COPI-coated vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in Golgi cis cisterna IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in Golgi trans cisterna IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Sec7 domain-containing protein sec72

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4386842..4392493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019984.3 → NP_594555.1  Sec7 domain-containing protein sec72 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594555.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9P7V5
    Conserved Domains (4) summary
    COG5307
    Location:393 → 1561
    COG5307; Guanine-nucleotide exchange factor, contains Sec7 domain [General function prediction only]
    pfam01369
    Location:708 → 891
    Sec7; Sec7 domain
    pfam09324
    Location:1249 → 1329
    DUF1981; Domain of unknown function (DUF1981)
    pfam12783
    Location:385 → 552
    Sec7_N; Guanine nucleotide exchange factor in Golgi transport N-terminal
Nucleotide Protein
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