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tsr3 SSU-rRNA maturation protein Tsr3 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542142, updated on 18-Sep-2024

Summary

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Official Symbol
tsr3
Official Full Name
SSU-rRNA maturation protein Tsr3
Primary source
PomBase:SPAC1F3.04c
Locus tag
SPOM_SPAC1F3.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See tsr3 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (621054..622220, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene MEK kinase (MEKK) Mkh1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Lgl family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene adaptin family protein Neighboring gene mitotic and meiotic spindle pole body protein, gamma tubulin complex linker-related Spo15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article
  4. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene. Lang BF, et al. J Mol Biol, 1985 Aug 5. PMID 4046021
  5. Nucleotide sequence of the gene encoding the small ribosomal RNA in the mitochondrial genome of the fission yeast Schizosaccharomyces pombe. Trinkl H, et al. Nucleic Acids Res, 1989 Aug 25. PMID 2780299, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 18S rRNA aminocarboxypropyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables S-adenosyl-L-methionine binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in enzyme-directed rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
involved_in maturation of SSU-rRNA IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
SSU-rRNA maturation protein Tsr3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    621054..622220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018406.3 → NP_593007.1  SSU-rRNA maturation protein Tsr3 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593007.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q10409
    Conserved Domains (3) summary
    COG2042
    Location:16 → 195
    Tsr3; Ribosome biogenesis protein Tsr3 (rRNA maturation) [Translation, ribosomal structure and biogenesis]
    pfam04034
    Location:65 → 189
    DUF367; Domain of unknown function (DUF367)
    pfam04068
    Location:27 → 61
    RLI; Possible Fer4-like domain in RNase L inhibitor, RLI
Nucleotide Protein
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