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ubi2 ubiquitin-60S ribosomal protein L40 fusion protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542428, updated on 18-Sep-2024

Summary

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Official Symbol
ubi2
Official Full Name
ubiquitin-60S ribosomal protein L40 fusion protein
Primary source
PomBase:SPAC1805.12c
Locus tag
SPOM_SPAC1805.12C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
uep1
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Genomic context

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See ubi2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2794057..2794775, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene methionyl-tRNA formyltransferase Fmt1 Neighboring gene 40S ribosomal protein eS26 Neighboring gene uncharacterized protein Neighboring gene 60S ribosomal protein eL14 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of Rpn10 and its interactions with polyubiquitin chains and the proteasome subunit Rpn12. Riedinger C, et al. J Biol Chem, 2010 Oct 29. PMID 20739285, Free PMC Article
  2. Involvement of rhp23, a Schizosaccharomyces pombe homolog of the human HHR23A and Saccharomyces cerevisiae RAD23 nucleotide excision repair genes, in cell cycle control and protein ubiquitination. Elder RT, et al. Nucleic Acids Res, 2002 Jan 15. PMID 11788722, Free PMC Article
  3. Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Stewart EV, et al. Mol Cell, 2011 Apr 22. PMID 21504829, Free PMC Article
  4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein tag activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
  
enables ubiquitin protein ligase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
  
involved_in modification-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ribosome biogenesis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleolus HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin-60S ribosomal protein L40 fusion protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2794057..2794775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019352.3 → NP_593923.1  ubiquitin-60S ribosomal protein L40 fusion protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593923.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13697, O14257, P0C014, P0C015, P0CH06, P0CH07, Q76PD0, Q9HDZ4
    Conserved Domains (3) summary
    cd01803
    Location:1 → 76
    Ubiquitin; Ubiquitin
    smart00213
    Location:1 → 72
    UBQ; Ubiquitin homologues
    pfam01020
    Location:78 → 126
    Ribosomal_L40e; Ribosomal L40e family
Nucleotide Protein
Heading Accession and Version

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Research Materials