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rsd1 RNA-binding protein Rsd1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542545, updated on 18-Sep-2024

Summary

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Official Symbol
rsd1
Official Full Name
RNA-binding protein Rsd1
Primary source
PomBase:SPAC19G12.07c
Locus tag
SPOM_SPAC19G12.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rsd1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_003424.3 (4053604..4056272, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ureidoglycolate hydrolase Neighboring gene citrate transporter Neighboring gene ncRNA Neighboring gene histone H2A beta Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ER sphingosine hydroxylase Scs7 Neighboring gene tRNA-Leu

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A U1-U2 snRNP interaction network during intron definition. Shao W, et al. Mol Cell Biol, 2012 Jan. PMID 22064476, Free PMC Article
  2. Interacting factors and cellular localization of SR protein-specific kinase Dsk1. Tang Z, et al. Exp Cell Res, 2012 Oct 1. PMID 22683458
  3. The proper splicing of RNAi factors is critical for pericentric heterochromatin assembly in fission yeast. Kallgren SP, et al. PLoS Genet, 2014. PMID 24874881, Free PMC Article
  4. Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10. Livesay SB, et al. Eukaryot Cell, 2013 Nov. PMID 24014766, Free PMC Article
  5. Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. Ren L, et al. PLoS One, 2011 Feb 28. PMID 21386897, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding NAS
Non-traceable Author Statement
more info
  
enables U1 snRNP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables U1 snRNP binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 
part_of spliceosomal complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein Rsd1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4053604..4056272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019851.3 → NP_594422.2  RNA-binding protein Rsd1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594422.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13845
    Conserved Domains (4) summary
    cd12283
    Location:241 → 313
    RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    cd12284
    Location:342 → 413
    RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
    cd12285
    Location:505 → 589
    RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    pfam15519
    Location:476 → 523
    RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein
Nucleotide Protein
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