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sec16 multidomain vesicle coat component Sec16 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542678, updated on 14-Nov-2024

Summary

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Official Symbol
sec16
Official Full Name
multidomain vesicle coat component Sec16
Primary source
PomBase:SPAC29B12.07
Locus tag
SPOM_SPAC29B12.07
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See sec16 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (5419737..5426266)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene S-adenosylmethionine-dependent methyltransferase Neighboring gene CCR4-NOT complex subunit Rcd1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput knockout screen in Schizosaccharomyces pombe identifies a novel gene required for efficient homolog disjunction during meiosis I. Rumpf C, et al. Cell Cycle, 2010 May. PMID 20404563, Free PMC Article
  2. SUMOylation is required for normal development of linear elements and wild-type meiotic recombination in Schizosaccharomyces pombe. Spirek M, et al. Chromosoma, 2010 Feb. PMID 19756689
  3. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in autophagy ISO
Inferred from Sequence Orthology
more info
  
involved_in intracellular protein transport NAS
Non-traceable Author Statement
more info
  
involved_in protein localization to endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle coating ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of COPII vesicle coat ISO
Inferred from Sequence Orthology
more info
  
is_active_in ER to Golgi transport vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm HDA PubMed 
is_active_in endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
multidomain vesicle coat component Sec16

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5419737..5426266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020416.3 → NP_594985.1  multidomain vesicle coat component Sec16 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594985.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14029
    Conserved Domains (3) summary
    pfam12931
    Location:1266 → 1566
    Sec16_C; Sec23-binding domain of Sec16
    pfam12932
    Location:1093 → 1185
    Sec16; Vesicle coat trafficking protein Sec16 mid-region
    pfam12935
    Location:326 → 551
    Sec16_N; Vesicle coat trafficking protein Sec16 N-terminus
Nucleotide Protein
Heading Accession and Version

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