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ecm31 3-methyl-2-oxobutanoatehydroxymethyltransferase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542731, updated on 18-Sep-2024

Summary

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Official Symbol
ecm31
Official Full Name
3-methyl-2-oxobutanoatehydroxymethyltransferase
Primary source
PomBase:SPAC5H10.09c
Locus tag
SPOM_SPAC5H10.09C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ecm31 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (160977..161816, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene pantoate-beta-alanine ligase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene NADPH dehydrogenase Neighboring gene ncRNA Neighboring gene alpha-1,2-galactosyltransferase Gmh1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Das J, et al. Sci Signal, 2013 May 21. PMID 23695164, Free PMC Article
  2. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
  3. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
  4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables magnesium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in pantothenate biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
3-methyl-2-oxobutanoatehydroxymethyltransferase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    160977..161816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018222.3 → NP_592822.1  3-methyl-2-oxobutanoatehydroxymethyltransferase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_592822.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09672
    Conserved Domains (1) summary
    PRK00311
    Location:6 → 267
    panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials