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Tf2-2 retrotransposable element/transposon Tf2-type [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542797, updated on 3-Dec-2024

Summary

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Official Symbol
Tf2-2
Official Full Name
retrotransposable element/transposon Tf2-type
Primary source
PomBase:SPAC167.08
Locus tag
SPOM_SPAC167.08
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC1705.01c
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Genomic context

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See Tf2-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (1564101..1568217, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase Ppk4 Neighboring gene 5S ribosomal RNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene extracellular leucine-rich repeat domain, receptor L domain-like Ecm33

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast. Sehgal A, et al. PLoS Genet, 2007 Aug. PMID 17696611, Free PMC Article
  2. Restriction of Retrotransposon Mobilization in Schizosaccharomyces pombe by Transcriptional Silencing and Higher-Order Chromatin Organization. Murton HE, et al. Genetics, 2016 Aug. PMID 27343236, Free PMC Article
  3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. we describe the impact of silencing and clustering on the mobility of an endogenous Tf2 element. Deletion of genes such as set1(+) or abp1(+) that both alleviate silencing and clustering, result in a corresponding increase in mobilization. Furthermore, expression of constitutively active Sre1, a transcriptional activator of Tf2 elements, also alleviates clustering and induces mobilization
    Title: Restriction of Retrotransposon Mobilization in Schizosaccharomyces pombe by Transcriptional Silencing and Higher-Order Chromatin Organization.
  2. Tf2 solo long terminal repeats throughout the genome direct oxygen-dependent expression of adjacent coding and noncoding sequences.
    Title: SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
retrotransposable element/transposon Tf2-type

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1564101..1568217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018817.3 → NP_593385.2  retrotransposable element/transposon Tf2-type [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593385.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0CT34, P0CT35, P0CT37, P0CT40
    Conserved Domains (7) summary
    pfam12382
    Location:219 → 355
    Peptidase_A2E; Retrotransposon peptidase
    COG2801
    Location:968 → 1140
    Tra5; Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]
    cd01647
    Location:439 → 615
    RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
    cd09274
    Location:710 → 833
    RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
    pfam00078
    Location:455 → 615
    RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
    pfam00665
    Location:983 → 1093
    rve; Integrase core domain
    cl21453
    Location:324 → 471
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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