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Tf2-8 retrotransposable element/transposon Tf2-type [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542903, updated on 18-Sep-2024

Summary

Official Symbol
Tf2-8
Official Full Name
retrotransposable element/transposon Tf2-type
Primary source
PomBase:SPAC19D5.09c
Locus tag
SPOM_SPAC19D5.09C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC13D1.02c
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Genomic context

See Tf2-8 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (5195711..5199712, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene retrotransposable element/transposon Tf2-type Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein tyrosine phosphatase Pyp2

General gene information

Gene Ontology Provided by PomBase

Process Evidence Code Pubs
involved_in DNA integration  
Component Evidence Code Pubs
is_active_in cellular_component  

General protein information

Preferred Names
retrotransposable element/transposon Tf2-type

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5195711..5199712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020327.1NP_594898.2  retrotransposable element/transposon Tf2-type [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594898.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0CT42, P0CT43, Q9C0R2, Q9C119
    Conserved Domains (7) summary
    pfam12382
    Location:219355
    Peptidase_A2E; Retrotransposon peptidase
    COG2801
    Location:9681140
    Tra5; Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]
    cd01647
    Location:439615
    RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
    cd09274
    Location:710833
    RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
    pfam00078
    Location:455615
    RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
    pfam00665
    Location:9831093
    rve; Integrase core domain
    cl21453
    Location:324471
    PKc_like; Protein Kinases, catalytic domain
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