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vps53 GARP complex subunit Vps53 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542930, updated on 18-Sep-2024

Summary

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Official Symbol
vps53
Official Full Name
GARP complex subunit Vps53
Primary source
PomBase:SPAC3A12.15
Locus tag
SPOM_SPAC3A12.15
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See vps53 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (1446481..1449286)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene F1-ATPase chaperone Atp11 Neighboring gene translation initiation factor eIF3j (p35) Neighboring gene ncRNA Neighboring gene calmodulin Cam1 Neighboring gene tRNA-Pro Neighboring gene ncRNA Neighboring gene TIM23 translocase complex subunit Tim17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene. Lang BF, et al. J Mol Biol, 1985 Aug 5. PMID 4046021

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi to vacuole transport ISO
Inferred from Sequence Orthology
more info
  
involved_in intracellular protein transport IC
Inferred by Curator
more info
  
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of GARP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm HDA PubMed 
is_active_in endosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
GARP complex subunit Vps53

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1446481..1449286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018773.3 → NP_593341.1  GARP complex subunit Vps53 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593341.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P87129
    Conserved Domains (1) summary
    pfam04100
    Location:16 → 394
    Vps53_N; Vps53-like, N-terminal
Nucleotide Protein
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