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DDL60-like DEAD/DEAH box helicase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543333, updated on 18-Sep-2024

Summary

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Official Full Name
DDL60-like DEAD/DEAH box helicase
Primary source
PomBase:SPAC694.02
Locus tag
SPOM_SPAC694.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (4200171..4205612)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene zf-CCHC type zinc finger protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene nicotinamide-nucleotide adenylyltransferase Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene 40S ribosomal protein eS25

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The S. pombe translation initiation factor eIF4G is Sumoylated and associates with the SUMO protease Ulp2. Jongjitwimol J, et al. PLoS One, 2014. PMID 24818994, Free PMC Article
  2. Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions. Nie M, et al. J Biol Chem, 2012 Aug 24. PMID 22730331, Free PMC Article
  3. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
  4. Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries. Wang J, et al. Genes Dev, 2013 Sep 1. PMID 24013502, Free PMC Article
  5. Transcription and chromatin-based surveillance mechanism controls suppression of cryptic antisense transcription. Heo DH, et al. Cell Rep, 2021 Sep 7. PMID 34496258, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IC
Inferred by Curator
more info
  
enables RNA helicase activity ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 

General protein information

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Preferred Names
DDL60-like DEAD/DEAH box helicase
NP_594482.1
  • DEAD/DEAH box helicase, human DDL60 and DDL60L ortholog, implicated in mRNA degradation

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4200171..4205612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019911.3 → NP_594482.1  DDL60-like DEAD/DEAH box helicase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594482.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9P7T8
    UniProtKB/TrEMBL
    S6BSJ4
    Conserved Domains (3) summary
    smart00490
    Location:1224 → 1294
    HELICc; helicase superfamily c-terminal domain
    COG4581
    Location:527 → 1709
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    pfam00270
    Location:740 → 902
    DEAD; DEAD/DEAH box helicase
Nucleotide Protein
Heading Accession and Version

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