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MIR9-3HG MIR9-3 host gene [ Homo sapiens (human) ]

Gene ID: 254559, updated on 10-Dec-2024

Summary

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Official Symbol
MIR9-3HGprovided by HGNC
Official Full Name
MIR9-3 host geneprovided by HGNC
Primary source
HGNC:HGNC:27388
See related
Ensembl:ENSG00000255571 AllianceGenome:HGNC:27388
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BS-DRL1; LINC00925; lnc-FANCI-2
Expression
Biased expression in brain (RPKM 10.1), testis (RPKM 6.8) and 2 other tissues See more
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Genomic context

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See MIR9-3HG in Genome Data Viewer
Location:
15q26.1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (89361579..89398488)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (87117636..87154521)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (89904810..89941719)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10049 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:89880071-89880240 Neighboring gene tRNA-Arg (anticodon TCG) 1-1 Neighboring gene POLG divergent transcript Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:89891730-89892929 Neighboring gene uncharacterized LOC124903549 Neighboring gene Sharpr-MPRA regulatory region 10069 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6794 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6795 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89910855-89911468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89913278-89914160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89914161-89915042 Neighboring gene uncharacterized LOC107984777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10051 Neighboring gene microRNA 9-3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89943355-89943880 Neighboring gene uncharacterized LOC105371031 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89943881-89944405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10052 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:89950909-89951506 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89959457-89959966 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89959967-89960475 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6797 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89977117-89977646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89984167-89984846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89984847-89985526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89988016-89988870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89991872-89992466 Neighboring gene uncharacterized LOC105370964 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6798 Neighboring gene uncharacterized LOC112268153

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Development and validation of an autophagy-related long non-coding RNA prognostic signature for cervical squamous cell carcinoma and endocervical adenocarcinoma. Zhou S, et al. Front Oncol, 2022. PMID 36408157, Free PMC Article
  2. LncRNA MIR9-3HG enhances LIMK1 mRNA and protein levels to contribute to the carcinogenesis of lung squamous cell carcinoma via sponging miR-138-5p and recruiting TAF15. Xiong Y, et al. Pathol Res Pract, 2022 Sep. PMID 35933883
  3. Dysregulated LncRNAs Act as Competitive Endogenous RNAs and Are Associated With Cervical Cancer Development in UYGHUR Women. Chen Y, et al. Technol Cancer Res Treat, 2021 Jan-Dec. PMID 33596784, Free PMC Article
  4. Identification of N(6)-methyladenosine-related lncRNAs for patients with primary glioblastoma. Wang W, et al. Neurosurg Rev, 2021 Feb. PMID 31938968
  5. Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. Baskerville S, et al. RNA, 2005 Mar. PMID 15701730, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Our study provides evidence that miR-9 can promote the proliferation, migration, and invasion of breast cancer cells via down-regulating FOXO1.
    Title: MicroRNA-9 promotes the proliferation, migration, and invasion of breast cancer cells via down-regulating FOXO1.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • Brain specific DNA-damage related lncRNA 1
  • CTD-2335A18.1
  • long intergenic non-protein coding RNA 925

Clone Names

  • FLJ30148, FLJ39040

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015411.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000658764.1

  2. NR_133001.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000536780.6

  3. NR_133002.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  4. NR_133003.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  5. NR_190290.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  6. NR_190291.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000658770.1

  7. NR_190292.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000666816.1

  8. NR_190293.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  9. NR_190294.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  10. NR_190295.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  11. NR_190296.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  12. NR_190297.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000670779.1

  13. NR_190298.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  14. NR_190299.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  15. NR_190300.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  16. NR_190301.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  17. NR_190302.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  18. NR_190303.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  19. NR_190304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  20. NR_190305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  21. NR_190306.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  22. NR_190307.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  23. NR_190308.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  24. NR_190309.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  25. NR_190310.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  26. NR_190311.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  27. NR_190312.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000654171.1

  28. NR_190313.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  29. NR_190314.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000654184.1

  30. NR_190315.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000659235.1

  31. NR_190316.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000661040.1

  32. NR_190317.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000669499.1

  33. NR_190318.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000657897.1

  34. NR_190319.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000661036.1

  35. NR_190320.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  36. NR_190321.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  37. NR_190322.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637
    Related
    ENST00000654079.1

  38. NR_190323.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  39. NR_190324.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  40. NR_190325.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

  41. NR_190326.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013391, AC133637

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    89361579..89398488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    87117636..87154521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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