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T25C12.3 C-type LECtin [ Caenorhabditis elegans ]

Gene ID: 259727, updated on 18-Sep-2024

Summary

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Official Symbol
T25C12.3
Official Full Name
C-type LECtin
Primary source
WormBase:WBGene00012018
Locus tag
CELE_T25C12.3
See related
AllianceGenome:WB:WBGene00012018
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See T25C12.3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
32
Sequence:
Chromosome: X; NC_003284.9 (11491087..11499999, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Saposin B-type domain-containing protein Neighboring gene Saposin B-type domain-containing protein Neighboring gene Kazal-like domain-containing protein Neighboring gene Coiled-coil domain-containing protein 149

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Caenorhabditis elegans galectins LEC-6 and LEC-10 interact with similar glycoconjugates in the intestine. Maduzia LL, et al. J Biol Chem, 2011 Feb 11. PMID 21115491, Free PMC Article
  2. Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal. Zinovyeva AY, et al. Proc Natl Acad Sci U S A, 2015 Sep 22. PMID 26351692, Free PMC Article
  3. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  4. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
C-type LECtin
NP_509919.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    11491087..11499999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077518.5 → NP_509919.2  C-type LECtin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509919.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECR0
    Conserved Domains (4) summary
    smart00034
    Location:1126 → 1236
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00604
    Location:1262 → 1401
    MD; MD domain
    cd00198
    Location:1484 → 1660
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01450
    Location:1914 → 2070
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
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