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HINFP histone H4 transcription factor [ Homo sapiens (human) ]

Gene ID: 25988, updated on 27-Nov-2024

Summary

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Official Symbol
HINFPprovided by HGNC
Official Full Name
histone H4 transcription factorprovided by HGNC
Primary source
HGNC:HGNC:17850
See related
Ensembl:ENSG00000172273 MIM:607099; AllianceGenome:HGNC:17850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIZF; HiNF-P; ZNF743
Summary
This gene encodes a transcription factor that interacts with methyl-CpG-binding protein-2 (MBD2), a component of the MeCP1 histone deacetylase (HDAC) complex, and plays a role in DNA methylation and transcription repression. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Aug 2011]
Expression
Ubiquitous expression in testis (RPKM 6.2), lymph node (RPKM 4.3) and 25 other tissues See more
Orthologs
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Genomic context

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See HINFP in Genome Data Viewer
Location:
11q23.3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (119121580..119136059)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (119141956..119156439)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (118992290..119006769)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118965105-118965668 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118965669-118966232 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118966233-118966796 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:118966797-118967358 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:118972216-118973415 Neighboring gene dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 Neighboring gene H2A.X variant histone Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3969 Neighboring gene C2CD2 like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5626 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3971 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119027357-119027857 Neighboring gene ATP binding cassette subfamily G member 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119029281-119029780 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119039524-119040229 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119040230-119040934 Neighboring gene NLR family member X1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The histone gene transcription factor HiNF-P stabilizes its cell cycle regulatory co-activator p220NPAT. Medina R, et al. Biochemistry, 2006 Dec 26. PMID 17176114, Free PMC Article
  2. CpG island promoter methylation and silencing of 14-3-3sigma gene expression in LNCaP and Tramp-C1 prostate cancer cell lines is associated with methyl-CpG-binding protein MBD2. Pulukuri SM, et al. Oncogene, 2006 Aug 3. PMID 16786000, Free PMC Article
  3. Sequence-specific transcriptional repression by an MBD2-interacting zinc finger protein MIZF. Sekimata M, et al. Nucleic Acids Res, 2004. PMID 14752047, Free PMC Article
  4. Regulation of Rb gene expression by an MBD2-interacting zinc finger protein MIZF during myogenic differentiation. Sekimata M, et al. Biochem Biophys Res Commun, 2004 Dec 17. PMID 15541338
  5. HiNF-P is a bifunctional regulator of cell cycle controlled histone H4 gene transcription. Mitra P, et al. J Cell Biochem, 2007 May 1. PMID 17163457

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Observational study of gene-disease association, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator)
    Title: Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study.
  2. Observational study of gene-disease association. (HuGE Navigator)
    Title: Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.
  3. Results suggest that cyclin-dependent kinase inhibitors selectively control stimulation of the histone H4 gene promoter by the p220(NPAT)/HiNF-P complex.
    Title: CDK inhibitors selectively diminish cell cycle controlled activation of the histone H4 gene promoter by p220NPAT and HiNF-P.
  4. a novel HiNF-P-specific conserved region represents a DNA-binding determinant that plays a role in mediating histone gene expression during the cell cycle and defines HiNF-P as a cell cycle regulatory member of the zinc finger transcription factor family
    Title: The histone gene cell cycle regulator HiNF-P is a unique zinc finger transcription factor with a novel conserved auxiliary DNA-binding motif.
  5. HiNF-P-dependent stabilization of p220NPAT reinforces signaling through the cyclin E/CDK2/p220NPAT pathway and contributes to coordinate control of histone gene expression.
    Title: The histone gene transcription factor HiNF-P stabilizes its cell cycle regulatory co-activator p220NPAT.
  6. HiNF-P/P220NPAT regulates expression of nonhistone targets that influence competency for cell cycle progression.
    Title: The HiNF-P/p220NPAT cell cycle signaling pathway controls nonhistone target genes.
  7. These results suggest that transcriptional repression of Rb by MIZF could be one of the critical determinants in myogenic differentiation.
    Title: Regulation of Rb gene expression by an MBD2-interacting zinc finger protein MIZF during myogenic differentiation.
  8. the transcriptional silencing of the 14-3-3sigma gene is caused by promoter CpG island methylation associated with MBD2, which may play an important role in prostate cancer progression during the invasive and metastatic stages of the disease
    Title: CpG island promoter methylation and silencing of 14-3-3sigma gene expression in LNCaP and Tramp-C1 prostate cancer cell lines is associated with methyl-CpG-binding protein MBD2.
  9. These results suggest that RFP is a mediator connecting several MBD proteins and allowing the formation of a more potent transcriptional repressor complex.
    Title: RET finger protein enhances MBD2- and MBD4-dependent transcriptional repression.
  10. HiNF-P interacts directly with p220(NPAT) to coactivate histone genes during S phase.
    Title: HiNF-P directly links the cyclin E/CDK2/p220NPAT pathway to histone H4 gene regulation at the G1/S phase cell cycle transition.
Submit: New GeneRIF Correction See all GeneRIFs (12)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • DKFZp434F162

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
enables enzyme binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables histone binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage checkpoint signaling IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in DNA repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in G1/S transition of mitotic cell cycle IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell cycle G1/S phase transition IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in establishment of protein localization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in in utero embryonic development ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in myoblast differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Cajal body IDA
Inferred from Direct Assay
more info
 PubMed 
NOT located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
histone H4 transcription factor
Names
MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein
MBD2-interacting zinc finger 1
MBD2-interacting zinc finger protein
histone H4 gene-specific protein HiNF-P
histone nuclear factor P
methyl-CpG-binding protein 2-interacting zinc finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243259.2 → NP_001230188.1  histone H4 transcription factor isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) uses an alternate acceptor splice site at the 3' terminal exon compared to variant 1. This results in a frame-shift, and a shorter isoform (2) with a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AP002956, AP003391
    Consensus CDS
    CCDS58188.1
    UniProtKB/Swiss-Prot
    Q9BQA5
    Related
    ENSP00000436815.1, ENST00000527410.3
    Conserved Domains (2) summary
    COG5236
    Location:171 → 303
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. NM_001351957.2 → NP_001338886.1  histone H4 transcription factor isoform 3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) encodes the longest isoform (3).
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    COG5236
    Location:194 → 326
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:309 → 329
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. NM_001351958.2 → NP_001338887.1  histone H4 transcription factor isoform 1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5), as well as variants 1, 2, 6, and 7, encodes isoform 1.
    Source sequence(s)
    AP002956, AP003391
    Consensus CDS
    CCDS8414.1
    UniProtKB/Swiss-Prot
    B3KPH6, B4DWB4, E9PQF4, Q96E65, Q9BQA5, Q9Y4M7
    Conserved Domains (2) summary
    COG5236
    Location:171 → 303
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. NM_001351959.2 → NP_001338888.1  histone H4 transcription factor isoform 1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6), as well as variants 1, 2, 5, and 7, encodes isoform 1.
    Source sequence(s)
    AP002956, AP003391
    Consensus CDS
    CCDS8414.1
    UniProtKB/Swiss-Prot
    B3KPH6, B4DWB4, E9PQF4, Q96E65, Q9BQA5, Q9Y4M7
    Conserved Domains (2) summary
    COG5236
    Location:171 → 303
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. NM_001351960.2 → NP_001338889.1  histone H4 transcription factor isoform 1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7), as well as variants 1, 2, 5, and 6, encodes isoform 1.
    Source sequence(s)
    AP002956, AP003391
    Consensus CDS
    CCDS8414.1
    UniProtKB/Swiss-Prot
    B3KPH6, B4DWB4, E9PQF4, Q96E65, Q9BQA5, Q9Y4M7
    Conserved Domains (2) summary
    COG5236
    Location:171 → 303
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. NM_001351961.2 → NP_001338890.1  histone H4 transcription factor isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8), as well as variant 9, encodes isoform 4.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    COG5236
    Location:171 → 303
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]

  7. NM_001351962.2 → NP_001338891.1  histone H4 transcription factor isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9), as well as variant 8, encodes isoform 4.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    COG5236
    Location:171 → 303
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]

  8. NM_001351963.2 → NP_001338892.1  histone H4 transcription factor isoform 5

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10), as well as variant 11, encodes isoform 5.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    COG5236
    Location:22 → 97
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:80 → 100
    ZF_C2H2; C2H2 Zn finger [structural motif]

  9. NM_001351964.2 → NP_001338893.1  histone H4 transcription factor isoform 5

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11), as well as variant 10, encodes isoform 5.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    COG5236
    Location:22 → 97
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:80 → 100
    ZF_C2H2; C2H2 Zn finger [structural motif]

  10. NM_001351965.2 → NP_001338894.1  histone H4 transcription factor isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (12), as well as variants 13, 14, 15, 16, and 17, encodes isoform 6.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    sd00017
    Location:39 → 59
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:10 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  11. NM_001351966.2 → NP_001338895.1  histone H4 transcription factor isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (13), as well as variants 12, 14, 15, 16, and 17, encodes isoform 6.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    sd00017
    Location:39 → 59
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:10 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  12. NM_001351969.2 → NP_001338898.1  histone H4 transcription factor isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (14), as well as variants 12, 13, 15, 16, and 17, encodes isoform 6.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    sd00017
    Location:39 → 59
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:10 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  13. NM_001351971.2 → NP_001338900.1  histone H4 transcription factor isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (15), as well as variants 12, 13, 14, 16, and 17, encodes isoform 6.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    sd00017
    Location:39 → 59
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:10 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  14. NM_001351972.2 → NP_001338901.1  histone H4 transcription factor isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (16), as well as variants 12, 13, 14, 15, and 17, encodes isoform 6.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    sd00017
    Location:39 → 59
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:10 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  15. NM_001351974.2 → NP_001338903.1  histone H4 transcription factor isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (17), as well as variants 12, 13, 14, 15, and 16, encodes isoform 6.
    Source sequence(s)
    AP002956, AP003391
    Conserved Domains (2) summary
    sd00017
    Location:39 → 59
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:10 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  16. NM_015517.5 → NP_056332.2  histone H4 transcription factor isoform 1

    See identical proteins and their annotated locations for NP_056332.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1), as well as variants 2, 5, 6, and 7, encodes isoform 1.
    Source sequence(s)
    AP002956, AP003391
    Consensus CDS
    CCDS8414.1
    UniProtKB/Swiss-Prot
    B3KPH6, B4DWB4, E9PQF4, Q96E65, Q9BQA5, Q9Y4M7
    Conserved Domains (2) summary
    COG5236
    Location:171 → 303
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]

  17. NM_198971.3 → NP_945322.1  histone H4 transcription factor isoform 1

    See identical proteins and their annotated locations for NP_945322.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2), as well as variants 1, 5, 6, and 7, encodes isoform 1.
    Source sequence(s)
    AP002956, AP003391
    Consensus CDS
    CCDS8414.1
    UniProtKB/Swiss-Prot
    B3KPH6, B4DWB4, E9PQF4, Q96E65, Q9BQA5, Q9Y4M7
    Related
    ENSP00000318085.3, ENST00000350777.7
    Conserved Domains (2) summary
    COG5236
    Location:171 → 303
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    119121580..119136059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011542744.3 → XP_011541046.1  histone H4 transcription factor isoform X1

    Conserved Domains (2) summary
    COG5236
    Location:185 → 317
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:300 → 320
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_017017499.2 → XP_016872988.1  histone H4 transcription factor isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    119141956..119156439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054368356.1 → XP_054224331.1  histone H4 transcription factor isoform X1

  2. XM_054368357.1 → XP_054224332.1  histone H4 transcription factor isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9BQA5.2 GenPept UniProtKB/Swiss-Prot:Q9BQA5

Gene LinkOut

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