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PAN0_012d4518 CDC5 protein [ Moesziomyces antarcticus ]

Gene ID: 26305382, updated on 29-Dec-2023

Summary

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Gene symbol
PAN0_012d4518
Gene description
CDC5 protein
Locus tag
PAN0_012d4518
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Moesziomyces antarcticus (strain: JCM 10317, type-material: type material of Sporobolomyces antarcticus)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces
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Genomic context

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See PAN0_012d4518 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_014638998.1Genomic Context describing neighboring genes Neighboring gene sad1/UNC domain protein Neighboring gene drug:H+ antiporter Neighboring gene uncharacterized protein Neighboring gene transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014638998.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Draft Genome Sequence of the Yeast Pseudozyma antarctica Type Strain JCM10317, a Producer of the Glycolipid Biosurfactants, Mannosylerythritol Lipids. Saika A, et al. Genome Announc, 2014 Sep 25. PMID 25291760, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CDC5 protein
XP_014655541.1
  • top hit is XP_760558.1 originated in Ustilago maydis 521

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_014638998.1 Reference assembly

    Range
    348233..350677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014800055.1 → XP_014655541.1  CDC5 protein [Moesziomyces antarcticus]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A081CI00, M9LW64
    Conserved Domains (2) summary
    COG5147
    Location:2 → 338
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam11831
    Location:419 → 647
    Myb_Cef; pre-mRNA splicing factor component
Nucleotide Protein
Heading Accession and Version

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