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RING/U-box protein with C6HC-type zinc finger [ Arabidopsis thaliana (thale cress) ]

Gene ID: 2745561, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box protein with C6HC-type zinc finger
Primary source
TAIR:AT2G26135
Locus tag
AT2G26135
See related
Araport:AT2G26135
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (11130119..11131514)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glycine-rich protein Neighboring gene RING/U-box protein with C6HC-type zinc finger Neighboring gene FTSH protease 4 Neighboring gene heat shock transcription factor A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box protein with C6HC-type zinc finger
NP_973536.1
  • RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT2G26130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11130119..11131514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_201807.1 → NP_973536.1  RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973536.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EXU6, F4ITM2
    Conserved Domains (5) summary
    smart00647
    Location:221 → 285
    IBR; In Between Ring fingers
    cd00162
    Location:153 → 202
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    pfam01485
    Location:286 → 346
    IBR; IBR domain, a half RING-finger domain
    cl14782
    Location:46 → 141
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
    cl17238
    Location:151 → 203
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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